CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 2
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88927
KRH01293
KRH01295
KRH01298
KRH03466
KRH16280
KRH16605
KRH16606
KRH18814
KRH18816
KRH24006
KRH27971
KRH29310
KRH45053
KRH53180
KRH54542
KRH56919
KRH63357
KRH65380
KRH75351
KRH76167
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38640.1	KRH16605	AT1G37130.1	21798944
AT5G38640.1	KRH16606	AT1G37130.1	21798944
AT5G38640.1	KRH18814	AT1G37130.1	21798944
AT5G38640.1	KRH18816	AT1G37130.1	21798944
AT5G38640.1	KRH53180	AT1G37130.1	21798944
AT5G38640.1	KRH01293	AT1G60080.1	21798944
AT5G38640.1	KRH01295	AT1G60080.1	21798944
AT5G38640.1	KRH01298	AT1G60080.1	21798944
AT5G38640.1	KRH16280	AT1G60080.1	21798944
AT5G38640.1	KRH45053	AT1G60080.1	21798944
AT5G38640.1	KRH03466	AT3G47620.1	21798944
AT5G38640.1	KRH54542	AT3G47620.1	21798944
AT5G38640.1	KRH56919	AT3G47620.1	21798944
AT5G38640.1	KRH63357	AT3G47620.1	21798944
AT5G38640.1	KRH24006	AT3G48150.1	21798944
AT5G38640.1	KRH27971	AT3G48150.1	21798944
AT5G38640.1	KRH29310	AT3G48150.1	21798944
AT5G38640.1	KRH77487	AT3G48150.1	21798944
AT5G38640.1	KRG88927	AT4G00150.1	21798944
AT5G38640.1	KRH65380	AT4G00150.1	21798944
AT5G38640.1	KRH75351	AT4G00150.1	21798944
AT5G38640.1	KRH76167	AT4G00150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0083g00170.t01	Wine grape	cytosol	62.58	80.89
KRH18264	Soybean	cytosol	83.18	80.27
Os03t0645200-01	Rice	cytosol, plastid	18.87	80.0
KRG93828	Soybean	endoplasmic reticulum, nucleus	82.86	79.85
Zm00001d033223_P003	Maize	cytosol	27.99	76.39
AT2G44070.1	Thale cress	cytosol	39.78	75.98
Bra028196.1-P	Field mustard	nucleus	68.87	69.52
CDY49077	Canola	cytosol, plastid	55.97	69.4
CDX74513	Canola	nucleus	68.71	69.37
CDY01647	Canola	cytosol	68.4	69.16
PGSC0003DMT400026040	Potato	cytosol	67.92	67.82
Solyc02g089810.2.1	Tomato	nucleus	67.45	67.35
AT5G38640.1	Thale cress	cytosol	67.45	66.82
KRH03820	Soybean	cytosol, mitochondrion, nucleus, plasma membrane	56.76	65.28
CDY27424	Canola	cytosol	12.42	64.75
GSMUA_Achr4P22890_001	Banana	cytosol	66.35	64.23
GSMUA_Achr7P01240_001	Banana	cytosol	64.94	63.93
KXG24018	Sorghum	mitochondrion, plastid	59.59	63.48
TraesCS5D01G384000.3	Wheat	mitochondrion	60.53	62.81
TraesCS5B01G376300.1	Wheat	mitochondrion	60.38	62.64
Zm00001d013692_P001	Maize	cytosol	59.91	62.56
TraesCS5A01G374400.3	Wheat	mitochondrion	60.06	62.32
Zm00001d031081_P001	Maize	endoplasmic reticulum, vacuole	53.14	61.9
Os12t0617100-01	Rice	mitochondrion	58.02	60.79
HORVU5Hr1G092900.2	Barley	mitochondrion	59.75	59.65
CDY16477	Canola	mitochondrion	58.33	56.47
CDX77270	Canola	mitochondrion	58.33	56.47
Bra014165.1-P	Field mustard	mitochondrion	58.18	56.32
KRH54799	Soybean	plastid	59.75	55.72
AT1G48970.1	Thale cress	mitochondrion	56.76	54.2
EER91168	Sorghum	plastid	60.22	53.05
KRH47707	Soybean	cytosol	13.36	24.5
KRH69015	Soybean	cytosol	14.15	23.56
KRG97288	Soybean	extracellular	13.99	22.47
KRH48472	Soybean	endoplasmic reticulum	13.21	20.24
KRH39206	Soybean	cytosol	13.21	20.24
KRH30036	Soybean	cytosol	12.26	18.8

Protein Annotations

KEGG:00270+5.3.1.23	EntrezGene:100785938	MapMan:17.4.1.2.3.4	Gene3D:3.40.50.10470	EMBL:ACUP02011516	ncoils:Coil
EnsemblPlantsGene:GLYMA_18G280600	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0044237	InterPro:IF-2B-related	UniProt:K7MV73	EnsemblPlants:KRH01494
ProteinID:KRH01494	ProteinID:KRH01494.1	InterPro:NagB/RpiA_transferase-like	PFAM:PF01008	PANTHER:PTHR10233	PANTHER:PTHR10233:SF28
MetaCyc:PWY-4361	MetaCyc:PWY-7174	SUPFAM:SSF100950	UniParc:UPI000296C124	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:-:56141403..56147728

Molecular Weight (calculated)

69295.0 Da

IEP (calculated)

9.817

GRAVY (calculated)

-0.263

Length

636 amino acids

Sequence
(BLAST)

001: MDARRAPRAV IDPKVRRVGF FAPPEPDPIS FEVSPSANSL SPVMIPPPRH SSENLGLHTR LAATSPSAQE SFAAGSYSSS SDFFPAPMSP ATSPYSSRIV
101: GGDGDFFAGG KAASSFPRGG FDLTATMASS VPASELTTVS VVNAASLSIR ERKKANKGGG SAVEVKDQAL NTKQQKKEKT SKAERRALQE AQRAAKAAAK
201: AEGNKASGTL ASVNVKPAKA AKPPQKVDNA SVAASEKKGG DRPPEKDRKK DVPQPRLQYD DKSRVEKAKR RAVVKQTEAK NRVELFRHLP QYEHGSQLPD
301: LEAKFFQLGP VHPAVYKVGL QYLSGDISGG NARCIAMLQA FQEAIEDYRV PSEKTLVRDL TAKISSYVSF LIECRPLSIS MGNAIRFLKS RIAKLPLTLS
401: ESESKTSLQS DIERFIYEKI ILANKVIVKH AVTKIRDGDV LLTYGSSSAV EMILLHAHGL GKQFRVVVVD SRPKLRGKLL LRRLVEKGLS CTYIHINAVS
501: YIMNEVTRVF LGASSVLSNG TVYSGVGTAC VAMVAHAFHV PVLVCCEAYK FHERVQHDSI CSNELGDPDV ISTVQSREDV NHLEAWANTE NLQLLNLIYD
601: ATPSDYVSMI ITDYGMVPPT SVPVIVREYS REQVWI

Best Arabidopsis Sequence Match ( AT5G38640.1 )
(BLAST)

001: MESRRNPRAV VDPKVRQVGF FTSSQPDSST QQQQPDPIAA TSASSSSSTI SPSGNSLSPV MIPPPRLNSS DTFPLRVAVA GAAASAVSPS SFSYSSRRDF
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV

Arabidopsis Description

At5g38640 [Source:UniProtKB/TrEMBL;Acc:Q9FFV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.