Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 2
- golgi 2
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d033223_P003 | Maize | cytosol | 33.7 | 78.97 |
| KXG24018 | Sorghum | mitochondrion, plastid | 84.98 | 77.72 |
| VIT_14s0083g00170.t01 | Wine grape | cytosol | 61.17 | 67.89 |
| AT2G44070.1 | Thale cress | cytosol | 40.29 | 66.07 |
| Os12t0617100-01 | Rice | mitochondrion | 71.43 | 64.25 |
| CDY27424 | Canola | cytosol | 13.55 | 60.66 |
| Zm00001d013692_P001 | Maize | cytosol | 65.38 | 58.62 |
| KRH03820 | Soybean | cytosol, mitochondrion, nucleus, plasma membrane | 56.04 | 55.33 |
| GSMUA_Achr4P22890_001 | Banana | cytosol | 65.02 | 54.03 |
| CDY49077 | Canola | cytosol, plastid | 50.73 | 54.0 |
| GSMUA_Achr7P01240_001 | Banana | cytosol | 63.37 | 53.56 |
| KRH01494 | Soybean | nucleus | 61.9 | 53.14 |
| Bra028196.1-P | Field mustard | nucleus | 60.99 | 52.86 |
| CDY01647 | Canola | cytosol | 60.81 | 52.78 |
| KRG93828 | Soybean | endoplasmic reticulum, nucleus | 63.74 | 52.73 |
| CDX74513 | Canola | nucleus | 60.81 | 52.7 |
| AT5G38640.1 | Thale cress | cytosol | 61.36 | 52.18 |
| VIT_17s0000g04230.t01 | Wine grape | plastid | 61.54 | 51.77 |
| PGSC0003DMT400026040 | Potato | cytosol | 60.26 | 51.65 |
| KRH18264 | Soybean | cytosol | 62.09 | 51.44 |
| Solyc02g089810.2.1 | Tomato | nucleus | 59.89 | 51.33 |
| PGSC0003DMT400059378 | Potato | cytosol, plastid | 56.96 | 50.16 |
| Solyc12g038340.1.1 | Tomato | nucleus | 55.31 | 48.71 |
| KRH54799 | Soybean | plastid | 57.33 | 45.89 |
| CDX77270 | Canola | mitochondrion | 55.13 | 45.81 |
| CDY16477 | Canola | mitochondrion | 54.95 | 45.66 |
| Bra014165.1-P | Field mustard | mitochondrion | 54.95 | 45.66 |
| AT1G48970.1 | Thale cress | mitochondrion | 53.48 | 43.84 |
| Zm00001d041758_P001 | Maize | cytoskeleton, cytosol, peroxisome | 14.65 | 22.04 |
| Zm00001d033046_P002 | Maize | cytosol | 13.0 | 17.07 |
| Zm00001d014246_P004 | Maize | cytosol | 13.0 | 15.92 |
Protein Annotations
| KEGG:00270+5.3.1.23 | MapMan:17.4.1.2.3.4 | Gene3D:3.40.50.10470 | UniProt:A0A1D6KGC9 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0044237 | InterPro:IF-2B-related |
| InterPro:NagB/RpiA_transferase-like | ProteinID:ONM02137.1 | ProteinID:ONM02141.1 | PFAM:PF01008 | PANTHER:PTHR10233 | PANTHER:PTHR10233:SF29 |
| SUPFAM:SSF100950 | UniParc:UPI000844DF97 | EnsemblPlantsGene:Zm00001d031081 | EnsemblPlants:Zm00001d031081_P001 | EnsemblPlants:Zm00001d031081_T001 | SEG:seg |
Description
NagB/RpiA/CoA transferase-like superfamily protein
Coordinates
chr1:-:176353803..176359733
Molecular Weight (calculated)
60685.0 Da
IEP (calculated)
8.784
GRAVY (calculated)
-0.296
Length
546 amino acids
Sequence
(BLAST)
(BLAST)
001: MIPPPLIPVP VPVPVAPASE SLAPSSPPPD SSSRPDAVSD LDDDDDIDVS WARPPPPAFP EPNKRHLTER KNEHAPPTPV SQKPKLSKAE RRAIQESQRA
101: AKAAAKEAGL KSTAMASDAN TKQPKTAKIS LKKDVNQVNS PVASDKKTGE RPPDKDRKKD APQPRMQFDD THRVVKAKKR SVVRQSEAQN RVELFRHLPQ
201: YAHGTQLPDL ESKFFQPDLM HPSVYKIQIR IILAMVDMIQ MDINILNMRF EYSDSDMVGL QYLSGDISGG NARCIAMLLA FREAINDYSM PSEKILNRDL
301: TAKISSYVSF LIECRPLSIS MGNAIRFLKN RITKLPLAFS ESEAKVSLQS DIDRFINEKI IVADKVIVSH AVTKIRDGDV LLTFGSASVV EMIFDNAHEL
401: GKKFRVVVVD SRPNHEGQGL LRRLVAKGIS CTYTHINAVS YIMHEVTRVF LGASSVLSNG TVYSRVGTAL VAMVAHAFGV PVLVCCEAYK FHERVQLDSI
501: CFNELGDPDA ISRVPRDESL SNLKNWAENE NLHLLNLKYV HCFVQV
101: AKAAAKEAGL KSTAMASDAN TKQPKTAKIS LKKDVNQVNS PVASDKKTGE RPPDKDRKKD APQPRMQFDD THRVVKAKKR SVVRQSEAQN RVELFRHLPQ
201: YAHGTQLPDL ESKFFQPDLM HPSVYKIQIR IILAMVDMIQ MDINILNMRF EYSDSDMVGL QYLSGDISGG NARCIAMLLA FREAINDYSM PSEKILNRDL
301: TAKISSYVSF LIECRPLSIS MGNAIRFLKN RITKLPLAFS ESEAKVSLQS DIDRFINEKI IVADKVIVSH AVTKIRDGDV LLTFGSASVV EMIFDNAHEL
401: GKKFRVVVVD SRPNHEGQGL LRRLVAKGIS CTYTHINAVS YIMHEVTRVF LGASSVLSNG TVYSRVGTAL VAMVAHAFGV PVLVCCEAYK FHERVQLDSI
501: CFNELGDPDA ISRVPRDESL SNLKNWAENE NLHLLNLKYV HCFVQV
001: MESRRNPRAV VDPKVRQVGF FTSSQPDSST QQQQPDPIAA TSASSSSSTI SPSGNSLSPV MIPPPRLNSS DTFPLRVAVA GAAASAVSPS SFSYSSRRDF
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV
Arabidopsis Description
At5g38640 [Source:UniProtKB/TrEMBL;Acc:Q9FFV8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.