Factsheet for Zm00001d049854_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021033_P001	Maize	cytosol	87.59	84.51
Zm00001d044450_P001	Maize	cytosol	73.72	83.47
EES15299	Sorghum	cytosol	89.78	40.2
TraesCS4A01G239300.1	Wheat	cytosol, nucleus, plastid	82.48	36.93
TraesCS4B01G075600.1	Wheat	cytosol, nucleus, plastid	81.75	36.6
TraesCS4D01G074300.1	Wheat	cytosol	81.75	36.6
Os11t0311300-03	Rice	cytosol	79.56	35.62
Zm00001d031643_P001	Maize	cytosol	88.32	33.99
KRH01298	Soybean	cytosol, nucleus, plastid	27.01	33.33
HORVU4Hr1G012650.14	Barley	cytosol	81.75	33.23
GSMUA_Achr7P02490_001	Banana	cytosol	59.12	28.03
Bra027816.1-P	Field mustard	cytosol	55.47	25.25
CDY63123	Canola	cytosol	55.47	25.25
PGSC0003DMT400019417	Potato	cytosol	55.47	25.08
CDY56983	Canola	cytosol	54.74	24.92
AT1G60080.1	Thale cress	cytosol	54.74	24.83
Solyc10g080130.1.1	Tomato	cytosol	54.01	24.03
VIT_08s0007g08550.t01	Wine grape	cytosol	54.01	23.79
KRH16280	Soybean	nucleus	53.28	23.78
KRH45053	Soybean	cytosol, nucleus	51.82	23.51
KRH01295	Soybean	plastid	15.33	23.33
Solyc06g075390.2.1	Tomato	nucleus	54.74	23.22
PGSC0003DMT400060984	Potato	golgi	43.07	17.93
Zm00001d014880_P002	Maize	extracellular	27.01	12.89
Zm00001d014882_P005	Maize	cytosol	23.36	11.9
Zm00001d016770_P002	Maize	nucleus	21.17	6.5
Zm00001d042612_P001	Maize	plastid	11.68	6.35
Zm00001d049855_P002	Maize	nucleus	8.03	5.09
KRH01293	Soybean	cytosol, nucleus	3.65	4.03
CDY33620	Canola	cytosol	5.84	4.0
Zm00001d002336_P001	Maize	cytosol	3.65	2.84
Zm00001d036997_P001	Maize	cytosol	4.38	2.23
Zm00001d045898_P001	Maize	cytosol, extracellular	2.19	1.96
Zm00001d033842_P001	Maize	cytosol	2.19	0.96

Protein Annotations

EnsemblPlants:Zm00001d049854_P001	EnsemblPlants:Zm00001d049854_T001	EnsemblPlantsGene:Zm00001d049854	Gene3D:3.30.230.70	InterPro:ExoRNase_PH_dom1	InterPro:IPR027408
InterPro:PNPase/RNase_PH_dom_sf	InterPro:Ribosomal_S5_D2-typ_fold	PANTHER:PTHR11097	PANTHER:PTHR11097:SF20	PFAM:PF01138	ProteinID:AQK51480.1
SUPFAM:SSF54211	UniParc:UPI0008426B90	UniProt:A0A1D6PYF0	MapMan:35.2	:	:

Description

3'-5'-exoribonuclease family protein

Coordinates

chr4:+:48322642..48323305

Molecular Weight (calculated)

14688.9 Da

IEP (calculated)

6.798

GRAVY (calculated)

0.163

Length

137 amino acids

Sequence
(BLAST)

001: MAAETKPAAA IGVAGEMEVE AYRRLFPVAF LERHLGESVR IDARRLREAR TTTVALGAVS SAHGSALVRV GDTAMLASVK LEVMSPSAEY PDEGSVSVEF
101: HMPPICSPLV RPGRSAEVAP VISKALEDVL MRFLSLR

Best Arabidopsis Sequence Match ( AT1G60080.1 )
(BLAST)

001: MGIPDAAQDL STEMEVDAFR RIFPLRFFER HLSESLRPDG RQLGKARDTI VNLGLVSTAD GSALAKIGST TMLAAIRMEV MTPSTDSPDE GCIAIEFHMP
101: PICSPTVRPG RPAEAAPVIS KRLSDTILSS GMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLAA VAAFSNLQIP IVALNDNGRI VAVTGEKDQD
201: NALITEKEAV NKEKRKLTLK NIPFSLTCIL HKNYILADPT TEEESIMDTL VTVVLDSSDQ MVSFYKSGGA ALAYSSAIKS CVELARKRAK ELKQILGEMD
301: ID

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.