Factsheet for Zm00001d042612_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013757_P010
Zm00001d033159_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60500.1	Zm00001d013757_P010	AT4G26630.1	25387881
AT3G60500.1	Zm00001d033159_P001	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045898_P001	Maize	cytosol, extracellular	51.98	85.62
Zm00001d002336_P001	Maize	cytosol	39.68	56.82
Zm00001d036997_P001	Maize	cytosol	56.35	52.79
Zm00001d033842_P001	Maize	cytosol	51.59	41.4
AT3G12990.1	Thale cress	cytosol	46.83	38.44
Os02t0550700-01	Rice	cytosol	58.73	37.47
TraesCS7A01G457300.1	Wheat	cytosol	57.54	36.25
GSMUA_Achr8P16380_001	Banana	cytosol	51.98	35.79
Zm00001d016770_P002	Maize	nucleus	61.11	34.53
KXG30375	Sorghum	nucleus	60.32	33.85
CDY70752	Canola	cytosol	47.22	33.81
TraesCS7B01G358800.3	Wheat	nucleus	58.73	33.04
TraesCS7D01G445900.2	Wheat	nucleus	58.33	32.89
HORVU7Hr1G105370.12	Barley	nucleus	58.33	32.81
HORVU6Hr1G027570.6	Barley	cytosol	57.94	32.59
TraesCS6A01G141100.2	Wheat	cytosol	57.94	32.59
TraesCS6B01G169200.2	Wheat	cytosol	57.54	32.37
TraesCS6D01G130400.3	Wheat	cytosol	57.54	32.37
GSMUA_Achr6P25490_001	Banana	cytosol	48.81	30.52
VIT_18s0072g00880.t01	Wine grape	nucleus	45.24	30.16
CDX98419	Canola	nucleus	46.83	28.71
CDX67830	Canola	nucleus	46.43	28.47
Bra003416.1-P	Field mustard	nucleus	46.43	28.47
AT3G60500.1	Thale cress	cytosol	47.62	27.4
Solyc05g047420.2.1	Tomato	nucleus	47.62	27.09
CDY41161	Canola	cytosol	46.43	26.83
Bra007540.1-P	Field mustard	nucleus	46.43	26.83
CDX71803	Canola	nucleus	46.43	26.59
KRH77682	Soybean	cytosol	43.25	24.94
KRH27808	Soybean	nucleus	43.65	23.4
Zm00001d049855_P002	Maize	nucleus	18.65	21.76
Zm00001d014882_P005	Maize	cytosol	22.22	20.82
Zm00001d014880_P002	Maize	extracellular	23.02	20.21
Zm00001d031643_P001	Maize	cytosol	23.81	16.85
Zm00001d021033_P001	Maize	cytosol	7.54	13.38
Zm00001d044450_P001	Maize	cytosol	5.95	12.4
Zm00001d049854_P001	Maize	cytosol	6.35	11.68

Protein Annotations

EnsemblPlants:Zm00001d042612_P001	EnsemblPlants:Zm00001d042612_T001	EnsemblPlantsGene:Zm00001d042612	Gene3D:3.30.230.70	InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf
InterPro:IPR027408	InterPro:PNPase/RNase_PH_dom_sf	InterPro:Ribosomal_S5_D2-typ_fold	PANTHER:PTHR11097	PANTHER:PTHR11097:SF21	PFAM:PF03725
ProteinID:ONM35854.1	SEG:seg	SUPFAM:SSF54211	SUPFAM:SSF55666	UniParc:UPI000845823D	UniProt:A0A1D6N5E6
MapMan:16.8.1.1.5	:	:	:	:	:

Description

Exosome complex component RRP45B

Coordinates

chr3:+:173571381..173573177

Molecular Weight (calculated)

27050.9 Da

IEP (calculated)

7.505

GRAVY (calculated)

0.061

Length

252 amino acids

Sequence
(BLAST)

001: MAPVLPAAPS SKPDPSHGPP SYPRRRRCCL GFLRLTPNLA AAARAGGLEL PVLPSSTTPG KWFPFLPLPR IPHPPLPLLR EPRISVLAPD IGLLQAFRSA
101: ARTLGESRAV DMEFLCVFAG KHVWSVRVDL HILDNGGNPI DAANITALAA LSTFWRPECT VGGDNGQQVT VHDPEVRDPL PLTIHHMPIA VTFAYFGEGN
201: IVVLDPTYKE EAVMGERMTA IVNSNGDVCA IQKAGGEGLM SSVTMQCLRI AS

Best Arabidopsis Sequence Match ( AT3G12990.1 )
(BLAST)

001: MEGRLNNMWR LTVNESKFVE SALQSELRVD GRGLYDYRKL TIKFGKEYGS SQVQLGQTHV MAFVTAQLVQ PYKDRPSEGS FSIFTEFSPM ADPSFEPGHP
101: GESAVELGRI IDRALRESRA VDTESLCVLA GKLVWSVRID LHILDNGGNL VDAANVAALA ALMTFRRPDC TVGGDNSQDV IIHPPEEREP LPLIIHHLPI
201: AFTFGFFNKG SILVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRASATT KIIRDAVEAY NRERSSQKVK RHHTLAKSEV
301: LGPIVVV

Arabidopsis Description

RRP45AExosome complex component RRP45A [Source:UniProtKB/Swiss-Prot;Acc:Q9LDM2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.