Factsheet for Bra007540.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010432.1-P
Bra026415.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60500.1	Bra010432.1-P	AT4G26630.1	25387881
AT3G60500.1	Bra026415.1-P	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70752	Canola	cytosol	79.13	98.01
CDY41161	Canola	cytosol	97.71	97.71
CDX71803	Canola	nucleus	95.41	94.55
AT3G12990.1	Thale cress	cytosol	63.53	90.23
AT3G60500.1	Thale cress	cytosol	88.76	88.36
Bra003416.1-P	Field mustard	nucleus	75.69	80.29
Zm00001d045898_P001	Maize	cytosol, extracellular	22.48	64.05
GSMUA_Achr8P16380_001	Banana	cytosol	52.06	62.02
Os02t0550700-01	Rice	cytosol	51.61	56.96
Solyc05g047420.2.1	Tomato	nucleus	57.11	56.21
TraesCS7A01G457300.1	Wheat	cytosol	50.0	54.5
GSMUA_Achr6P25490_001	Banana	cytosol	49.77	53.85
Zm00001d016770_P002	Maize	nucleus	54.82	53.59
HORVU7Hr1G105370.12	Barley	nucleus	54.82	53.35
TraesCS7B01G358800.3	Wheat	nucleus	54.82	53.35
KXG30375	Sorghum	nucleus	54.82	53.23
HORVU6Hr1G027570.6	Barley	cytosol	54.59	53.12
TraesCS6A01G141100.2	Wheat	cytosol	54.59	53.12
TraesCS7D01G445900.2	Wheat	nucleus	54.36	53.02
TraesCS6B01G169200.2	Wheat	cytosol	54.36	52.9
TraesCS6D01G130400.3	Wheat	cytosol	54.36	52.9
VIT_18s0072g00880.t01	Wine grape	nucleus	44.95	51.85
KRH77682	Soybean	cytosol	51.61	51.49
KRH27808	Soybean	nucleus	52.52	48.72
Zm00001d036997_P001	Maize	cytosol	30.05	48.7
Zm00001d042612_P001	Maize	plastid	26.83	46.43
Zm00001d002336_P001	Maize	cytosol	16.74	41.48
Zm00001d033842_P001	Maize	cytosol	25.0	34.71
Bra040025.1-P	Field mustard	cytosol	17.43	26.39
Bra029674.1-P	Field mustard	cytosol	17.43	25.94
Bra027816.1-P	Field mustard	cytosol	16.97	24.58

Protein Annotations

MapMan:16.8.1.1.5	Gene3D:3.30.230.70	EnsemblPlantsGene:Bra007540	EnsemblPlants:Bra007540.1	EnsemblPlants:Bra007540.1-P	InterPro:ExoRNase_PH_dom1
InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf	GO:GO:0000178	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR027408
UniProt:M4CTJ6	PFAM:PF01138	PFAM:PF03725	InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097	PANTHER:PTHR11097:SF21
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Rrp45	SUPFAM:SSF54211	SUPFAM:SSF55666	UniParc:UPI00025428BC	SEG:seg

Description

AT3G60500 (E=1e-200) CER7, G3 | CER7 (ECERIFERUM 7); 3'-5'-exoribonuclease/ RNA binding

Coordinates

chrA09:+:29687440..29689462

Molecular Weight (calculated)

48230.5 Da

IEP (calculated)

7.106

GRAVY (calculated)

-0.501

Length

436 amino acids

Sequence
(BLAST)

001: MEGRLANMWR LTVNERKFVE TALQSELRVD GRGLYDYRKL TIRFGKEYGS SEVQLGHTHV MGFVTAQLVQ PYKDRPNEGS LSIFTEFSPM ADPSFEPGRP
101: GESAVELGRI IDRGLRESRA VDTESLCVLA GKKVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENSQEV TIHSLEEREP LPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYI EEEVMCGRMT VTLNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIRDEVEAY NREKSLQKVK RHPTLAKPEV
301: SGPIVVVKEG HKKVSDEEEA AELSREHVER LNLSSVEVKS SKEQEAASNF KGGPSNWDPY TEAMDVDSLK ASLASKGESV TKSTIKKKTN DSGNVQKEVT
401: GDLEMKDTAE ATKHKTGELT LKDAVKPKKK RKNKSN

Best Arabidopsis Sequence Match ( AT3G60500.1 )
(BLAST)

001: MEGRLANMWR LTVNESKFVE TALQSELRVD GRGLYDYRKL TIKFGKEYGS SEVQLGQTHV MGFVTAQLVQ PYKDRPNEGS LSIFTEFSPM ADPSFEPGRP
101: GESAVELGRI IDRGLRESRA VDTESLCVLA GKMVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENGQEV IIHPLEEREP LPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIREEVEAY NCERSLQKVK RHPTLAKSEV
301: SGPTVAVKEE HRKSSDQERA AEISREHVER LKLSTEEVRS SKEEEAANFK GGPSNWDPYS EAMDVDSLKV SLASRGDPVT KSSSTKKMNG SGNAQKVGVE
401: ISVEEVTGEL GKKDTKHKDG EMTLKDAVKP KKKRKNKS

Arabidopsis Description

RRP45BExosome complex component RRP45B [Source:UniProtKB/Swiss-Prot;Acc:Q9M209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.