Factsheet for Bra029674.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35960	Canola	cytosol	99.32	99.32
Bra040025.1-P	Field mustard	cytosol	89.42	90.97
AT3G07750.2	Thale cress	cytosol	88.4	90.56
VIT_04s0008g06260.t01	Wine grape	cytosol	75.09	76.66
KRH08468	Soybean	cytosol	73.72	75.52
KRH70124	Soybean	endoplasmic reticulum, nucleus	72.35	74.13
PGSC0003DMT400032572	Potato	cytosol	72.01	73.26
EER90439	Sorghum	cytosol	70.31	72.03
Zm00001d014880_P002	Maize	extracellular	69.62	71.08
Os12t0403800-02	Rice	cytosol	68.26	70.42
OQU78915	Sorghum	cytoskeleton, cytosol, nucleus	68.6	70.03
GSMUA_Achr4P23580_001	Banana	cytosol	72.01	69.87
TraesCS7B01G206000.1	Wheat	cytosol	66.89	68.53
TraesCS7A01G305800.1	Wheat	cytosol	66.89	68.53
Zm00001d014882_P005	Maize	cytosol	62.46	68.03
TraesCS7D01G302500.1	Wheat	cytosol	66.21	67.83
Solyc08g007520.2.1	Tomato	nucleus	73.04	64.85
KRH14064	Soybean	cytosol, nucleus, plastid	50.51	59.68
HORVU7Hr1G072710.9	Barley	cytosol, plastid	67.24	59.52
Bra027816.1-P	Field mustard	cytosol	25.6	24.92
Bra003416.1-P	Field mustard	nucleus	26.28	18.73
Bra007540.1-P	Field mustard	nucleus	25.94	17.43

Protein Annotations

EnsemblPlants:Bra029674.1	EnsemblPlants:Bra029674.1-P	EnsemblPlantsGene:Bra029674	Gene3D:3.30.230.70	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2
InterPro:ExoRNase_PH_dom2_sf	InterPro:IPR027408	InterPro:PNPase/RNase_PH_dom_sf	InterPro:Ribosomal_S5_D2-typ_fold	PANTHER:PTHR11097	PANTHER:PTHR11097:SF8
PFAM:PF01138	PFAM:PF03725	SEG:seg	SUPFAM:SSF54211	SUPFAM:SSF55666	UniParc:UPI0002547ECD
UniProt:M4ELK6	MapMan:16.8.1.1.3	:	:	:	:

Description

AT3G07750 (E=4e-144) | 3' exoribonuclease family domain 1-containing protein

Coordinates

chrA05:-:22705443..22706924

Molecular Weight (calculated)

30839.7 Da

IEP (calculated)

4.686

GRAVY (calculated)

-0.014

Length

293 amino acids

Sequence
(BLAST)

001: MSVCVVMVAC SVGEQHFLKG GIAQELRTDG RKRLTYRHTY VKTGVIPQAN GSARVRIGGT DVIASVKAEI GRPSSLQPDK GKVAVFIDCS PTAEPTFGGR
101: GGEELSSDLA LALQRCLLGG KTGAGAGINL SSLLIKEGRV CWDLYIDGLV ISSDGNLLDA LSAAIKAALT NTALPKVQVS AEVADDEQPE IDISDEEYQQ
201: FDTSSVPVVV TLTKVGEHYI VDATEEEESR MSSAVSISVN RGGHICGLTK RGGCGLDPSV ILDMISVAKH VSESLMNKLD SKISAAEACE DES

Best Arabidopsis Sequence Match ( AT3G07750.2 )
(BLAST)

001: MGLSLGEQHF IKGGIAQDLR TDGRKRLTYR PIYVETGVIP QANGSARVRI GGTDVIASVK AEIGRPSSLQ PDKGKVAVFI DCSPTAEPTF GGRGGEELSS
101: ELALALQRCL LGGKSGAGAG INLSSLLIKE GKVCWDLYID GLVISSDGNL LDALGAAIKA ALTNTAIPKV NVSAEVADDE QPEIDISDEE YLQFDTSSVP
201: VIVTLTKVGT HYIVDATAEE ESQMSSAVSI SVNRTGHICG LTKRSGSGLD PSVILDMISV AKHVTETLMS KLDSEISAAE ACEDES

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9FPI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.