Factsheet for Bra027816.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra025795.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60080.1	Bra012213.1-P	AT2G25700.1	21798944
AT1G60080.1	Bra012214.1-P	AT2G25700.1	21798944
AT1G60080.1	Bra012216.1-P	AT2G25700.1	21798944
AT1G60080.1	Bra025795.1-P	AT2G25700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56983	Canola	cytosol	99.34	99.34
CDY63123	Canola	cytosol	99.34	99.34
AT1G60080.1	Thale cress	cytosol	88.7	88.41
KRH45053	Soybean	cytosol, nucleus	70.43	70.2
KRH01295	Soybean	plastid	20.93	70.0
KRH16280	Soybean	nucleus	68.77	67.43
VIT_08s0007g08550.t01	Wine grape	cytosol	69.44	67.2
PGSC0003DMT400019417	Potato	cytosol	66.45	66.01
CDY33620	Canola	cytosol	43.85	66.0
GSMUA_Achr7P02490_001	Banana	cytosol	62.79	65.4
Solyc10g080130.1.1	Tomato	cytosol	66.78	65.26
Solyc06g075390.2.1	Tomato	nucleus	67.11	62.54
Os11t0311300-03	Rice	cytosol	58.8	57.84
TraesCS4A01G239300.1	Wheat	cytosol, nucleus, plastid	58.47	57.52
TraesCS4B01G075600.1	Wheat	cytosol, nucleus, plastid	58.14	57.19
TraesCS4D01G074300.1	Wheat	cytosol	58.14	57.19
Zm00001d044450_P001	Maize	cytosol	22.92	57.02
Zm00001d021033_P001	Maize	cytosol	26.25	55.63
PGSC0003DMT400060984	Potato	golgi	60.8	55.62
Zm00001d049854_P001	Maize	cytosol	25.25	55.47
EES15299	Sorghum	cytosol	55.81	54.9
KRH01293	Soybean	cytosol, nucleus	22.26	54.03
HORVU4Hr1G012650.14	Barley	cytosol	58.47	52.23
KRH01298	Soybean	cytosol, nucleus, plastid	18.6	50.45
Zm00001d031643_P001	Maize	cytosol	56.81	48.03
Zm00001d049855_P002	Maize	nucleus	34.22	47.69
Bra040025.1-P	Field mustard	cytosol	24.92	26.04
Bra029674.1-P	Field mustard	cytosol	24.92	25.6
Bra003416.1-P	Field mustard	nucleus	23.92	17.52
Bra007540.1-P	Field mustard	nucleus	24.58	16.97

Protein Annotations

MapMan:16.8.1.1.4	Gene3D:3.30.230.70	EnsemblPlantsGene:Bra027816	EnsemblPlants:Bra027816.1	EnsemblPlants:Bra027816.1-P	InterPro:ExoRNase_PH_dom1
InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	InterPro:IPR027408	UniProt:M4EGA2	PFAM:PF01138	PFAM:PF03725	InterPro:PNPase/RNase_PH_dom_sf
PANTHER:PTHR11097	PANTHER:PTHR11097:SF20	InterPro:Ribosomal_S5_D2-typ_fold	SUPFAM:SSF54211	SUPFAM:SSF55666	UniParc:UPI0002542741
SEG:seg	:	:	:	:	:

Description

AT1G60080 (E=1e-130) | 3' exoribonuclease family domain 1-containing protein

Coordinates

chrA09:+:8928552..8930090

Molecular Weight (calculated)

32524.2 Da

IEP (calculated)

4.595

GRAVY (calculated)

-0.012

Length

301 amino acids

Sequence
(BLAST)

001: MGLPDSSQDL STEMEVDAFR RLFPLRFFER HLSESLRPDG RPLGTARDTI VNLGLVSSAD GSALAKIGST TMLAAIRMEV MSPSTDSPDE GCIAVEFHMP
101: PICSPTVRPG RPADEAPVIS KRLSDIFSSC DMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLSA VAAFSNLQIP VVALNDNGRI VAINGEQEEN
201: ASIKEKEAVN KEKRKLTLKN IPFALTCILH KKYILADPTA EEESIMDTLV TVVLDSSDQI VSFNKSGGNA LAGSSAIKSC VELARKRGKE LKQILGEMDI
301: D

Best Arabidopsis Sequence Match ( AT1G60080.1 )
(BLAST)

001: MGIPDAAQDL STEMEVDAFR RIFPLRFFER HLSESLRPDG RQLGKARDTI VNLGLVSTAD GSALAKIGST TMLAAIRMEV MTPSTDSPDE GCIAIEFHMP
101: PICSPTVRPG RPAEAAPVIS KRLSDTILSS GMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLAA VAAFSNLQIP IVALNDNGRI VAVTGEKDQD
201: NALITEKEAV NKEKRKLTLK NIPFSLTCIL HKNYILADPT TEEESIMDTL VTVVLDSSDQ MVSFYKSGGA ALAYSSAIKS CVELARKRAK ELKQILGEMD
301: ID

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.