Factsheet for VIT_08s0007g08550.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019417	Potato	cytosol	77.49	79.54
KRH45053	Soybean	cytosol, nucleus	75.56	77.81
Solyc10g080130.1.1	Tomato	cytosol	76.21	76.95
Solyc06g075390.2.1	Tomato	nucleus	78.14	75.23
GSMUA_Achr7P02490_001	Banana	cytosol	69.45	74.74
KRH16280	Soybean	nucleus	71.7	72.64
KRH01295	Soybean	plastid	20.9	72.22
AT1G60080.1	Thale cress	cytosol	67.52	69.54
Bra027816.1-P	Field mustard	cytosol	67.2	69.44
KRH01293	Soybean	cytosol, nucleus	27.65	69.35
CDY63123	Canola	cytosol	66.88	69.1
CDY56983	Canola	cytosol	66.88	69.1
PGSC0003DMT400060984	Potato	golgi	68.81	65.05
TraesCS4B01G075600.1	Wheat	cytosol, nucleus, plastid	59.49	60.46
TraesCS4A01G239300.1	Wheat	cytosol, nucleus, plastid	58.84	59.8
TraesCS4D01G074300.1	Wheat	cytosol	58.84	59.8
Os11t0311300-03	Rice	cytosol	58.2	59.15
Zm00001d021033_P001	Maize	cytosol	26.37	57.75
EES15299	Sorghum	cytosol	55.95	56.86
Zm00001d044450_P001	Maize	cytosol	21.54	55.37
HORVU4Hr1G012650.14	Barley	cytosol	59.49	54.9
Zm00001d049854_P001	Maize	cytosol	23.79	54.01
KRH01298	Soybean	cytosol, nucleus, plastid	18.01	50.45
Zm00001d049855_P002	Maize	nucleus	34.41	49.54
Zm00001d031643_P001	Maize	cytosol	55.95	48.88
CDY33620	Canola	cytosol	30.23	47.0
VIT_04s0008g06260.t01	Wine grape	cytosol	24.12	26.13
VIT_18s0072g00880.t01	Wine grape	nucleus	15.76	12.96

Protein Annotations

EntrezGene:100253817	wikigene:100253817	MapMan:16.8.1.1.4	Gene3D:3.30.230.70	ProteinID:CBI29839	ProteinID:CBI29839.3
UniProt:D7THW3	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf	EMBL:FN595991	GO:GO:0000176
GO:GO:0000177	GO:GO:0000467	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0017091
GO:GO:0034427	GO:GO:0034473	GO:GO:0034475	GO:GO:0034476	GO:GO:0043928	GO:GO:0071028
GO:GO:0071035	GO:GO:0071038	GO:GO:0071042	InterPro:IPR027408	EntrezGene:LOC100253817	wikigene:LOC100253817
PFAM:PF01138	PFAM:PF03725	InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097	PANTHER:PTHR11097:SF20	InterPro:Ribosomal_S5_D2-typ_fold
SUPFAM:SSF54211	SUPFAM:SSF55666	TIGR:TC70566	UniParc:UPI0001BE393F	ArrayExpress:VIT_08s0007g08550	EnsemblPlantsGene:VIT_08s0007g08550
EnsemblPlants:VIT_08s0007g08550.t01	RefSeq:XP_002284088	RefSeq:XP_002284088.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:21942961..21948833

Molecular Weight (calculated)

33627.7 Da

IEP (calculated)

4.726

GRAVY (calculated)

0.096

Length

311 amino acids

Sequence
(BLAST)

001: MVSANVSGDL SSEMEVDAFR RLFPLRYHER FLLDSIRPDA RPLGRARDTS LALGAVASAD GSALAKIGCT TMLAAVKMEV MTPPKESPDE GSIAIEFYMP
101: PICSPLVRPG RPAEEAPVVS KQLSDTILRH VNVVTSFSGM INLKELSLVS GKAAWMAYLD IYCLDADGSL FDAALLAAVA AFSHLRIPVV SLNEEGRVVV
201: VSEENEEGKS EKEPVNKGKR KLTLSSLPFS LTCILHKNYI LADPTAEEES IMETLVTVVL DSSGQLVSLY KPGGPVLAYA SAVQDCIALT RQRVKELKSI
301: LNEAISDMEV D

Best Arabidopsis Sequence Match ( AT1G60080.1 )
(BLAST)

001: MGIPDAAQDL STEMEVDAFR RIFPLRFFER HLSESLRPDG RQLGKARDTI VNLGLVSTAD GSALAKIGST TMLAAIRMEV MTPSTDSPDE GCIAIEFHMP
101: PICSPTVRPG RPAEAAPVIS KRLSDTILSS GMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLAA VAAFSNLQIP IVALNDNGRI VAVTGEKDQD
201: NALITEKEAV NKEKRKLTLK NIPFSLTCIL HKNYILADPT TEEESIMDTL VTVVLDSSDQ MVSFYKSGGA ALAYSSAIKS CVELARKRAK ELKQILGEMD
301: ID

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.