Factsheet for VIT_04s0008g06260.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08468	Soybean	cytosol	82.93	83.22
KRH70124	Soybean	endoplasmic reticulum, nucleus	82.58	82.87
EER90439	Sorghum	cytosol	80.14	80.42
AT3G07750.2	Thale cress	cytosol	79.79	80.07
Zm00001d014880_P002	Maize	extracellular	79.44	79.44
PGSC0003DMT400032572	Potato	cytosol	79.44	79.17
OQU78915	Sorghum	cytoskeleton, cytosol, nucleus	79.09	79.09
Os12t0403800-02	Rice	cytosol	78.05	78.87
CDY22130	Canola	cytosol	78.4	78.12
TraesCS7B01G206000.1	Wheat	cytosol	77.7	77.97
TraesCS7A01G305800.1	Wheat	cytosol	77.7	77.97
TraesCS7D01G302500.1	Wheat	cytosol	77.35	77.62
GSMUA_Achr4P23580_001	Banana	cytosol	81.53	77.48
Bra040025.1-P	Field mustard	cytosol	77.7	77.43
Zm00001d014882_P005	Maize	cytosol	71.43	76.21
CDY35960	Canola	cytosol	77.0	75.43
Bra029674.1-P	Field mustard	cytosol	76.66	75.09
Solyc08g007520.2.1	Tomato	nucleus	80.14	69.7
CDY28020	Canola	cytoskeleton, cytosol, nucleus	74.91	68.25
HORVU7Hr1G072710.9	Barley	cytosol, plastid	78.4	67.98
KRH14064	Soybean	cytosol, nucleus, plastid	56.45	65.32
VIT_08s0007g08550.t01	Wine grape	cytosol	26.13	24.12
VIT_18s0072g00880.t01	Wine grape	nucleus	19.51	14.81

Protein Annotations

EntrezGene:100261229	wikigene:100261229	MapMan:16.8.1.1.3	Gene3D:3.30.230.70	ProteinID:CBI21110	ProteinID:CBI21110.3
ncoils:Coil	UniProt:D7SV11	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf	EMBL:FN595231
GO:GO:0000176	GO:GO:0000177	GO:GO:0000467	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0017091
GO:GO:0034427	GO:GO:0034473	GO:GO:0034475	GO:GO:0034476	GO:GO:0043928	GO:GO:0071028
GO:GO:0071035	GO:GO:0071038	GO:GO:0071042	InterPro:IPR027408	EntrezGene:LOC100261229	wikigene:LOC100261229
PFAM:PF01138	PFAM:PF03725	InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097	PANTHER:PTHR11097:SF8	InterPro:Ribosomal_S5_D2-typ_fold
SUPFAM:SSF54211	SUPFAM:SSF55666	TIGR:TC70500	UniParc:UPI00015C897E	ArrayExpress:VIT_04s0008g06260	EnsemblPlantsGene:VIT_04s0008g06260
EnsemblPlants:VIT_04s0008g06260.t01	unigene:Vvi.18361	RefSeq:XP_002285435	RefSeq:XP_002285435.1	RefSeq:XP_010648722.1	RefSeq:XP_010648724.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:6089279..6096634

Molecular Weight (calculated)

29798.4 Da

IEP (calculated)

4.419

GRAVY (calculated)

0.033

Length

287 amino acids

Sequence
(BLAST)

001: MVGLSVGEKH FIQGGIAQDL RTDGRRRLTY RPFNVETGVI PQANGSARVR LGGTDVIASV KAELGKPSPS QPDKGKVNIY VDCSPTAAPM FEGRGGEELS
101: TELSGALQHC LLGGKSGAGA GIDLSSLVVV EGKVCWDLYI DGLVVSSDGN LLDALGAAIK AALTNTGIPK VEVAVGASGD GLPEVDISDD EYLQFDTSGV
201: PVIVTLTKVG RHYIVDATLE EESQMSSAVS VSVSGQGRIC GLIKRGGAGL DPSVILDMIS VAKHVSEQLM NKLDSEISAA EAFEEES

Best Arabidopsis Sequence Match ( AT3G07750.2 )
(BLAST)

001: MGLSLGEQHF IKGGIAQDLR TDGRKRLTYR PIYVETGVIP QANGSARVRI GGTDVIASVK AEIGRPSSLQ PDKGKVAVFI DCSPTAEPTF GGRGGEELSS
101: ELALALQRCL LGGKSGAGAG INLSSLLIKE GKVCWDLYID GLVISSDGNL LDALGAAIKA ALTNTAIPKV NVSAEVADDE QPEIDISDEE YLQFDTSSVP
201: VIVTLTKVGT HYIVDATAEE ESQMSSAVSI SVNRTGHICG LTKRSGSGLD PSVILDMISV AKHVTETLMS KLDSEISAAE ACEDES

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9FPI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.