CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08468	Soybean	cytosol	79.03	68.53
KRH70124	Soybean	endoplasmic reticulum, nucleus	78.23	67.83
VIT_04s0008g06260.t01	Wine grape	cytosol	65.32	56.45
AT3G07750.2	Thale cress	cytosol	63.71	55.24
EER90439	Sorghum	cytosol	63.31	54.9
TraesCS7B01G206000.1	Wheat	cytosol	63.31	54.9
TraesCS7A01G305800.1	Wheat	cytosol	63.31	54.9
Os12t0403800-02	Rice	cytosol	62.5	54.58
TraesCS7D01G302500.1	Wheat	cytosol	62.9	54.55
PGSC0003DMT400032572	Potato	cytosol	63.31	54.51
Zm00001d014880_P002	Maize	extracellular	62.5	54.01
CDY22130	Canola	cytosol	62.5	53.82
OQU78915	Sorghum	cytoskeleton, cytosol, nucleus	62.1	53.66
Bra040025.1-P	Field mustard	cytosol	62.1	53.47
GSMUA_Achr4P23580_001	Banana	cytosol	64.92	53.31
Zm00001d014882_P005	Maize	cytosol	55.24	50.93
Bra029674.1-P	Field mustard	cytosol	59.68	50.51
CDY35960	Canola	cytosol	59.68	50.51
Solyc08g007520.2.1	Tomato	nucleus	63.31	47.58
HORVU7Hr1G072710.9	Barley	cytosol, plastid	63.31	47.43
CDY28020	Canola	cytoskeleton, cytosol, nucleus	59.68	46.98
KRH44119	Soybean	plasma membrane	27.82	30.53
KRH01295	Soybean	plastid	9.68	26.67
KRH16280	Soybean	nucleus	22.58	18.24
KRH45053	Soybean	cytosol, nucleus	22.18	18.21
KRH77682	Soybean	cytosol	24.19	13.73
KRH01298	Soybean	cytosol, nucleus, plastid	6.05	13.51
KRH27808	Soybean	nucleus	24.19	12.77
KRH01293	Soybean	cytosol, nucleus	5.65	11.29

Protein Annotations

MapMan:16.8.1.1.3	Gene3D:3.30.230.70	EMBL:ACUP02008492	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2_sf	EnsemblPlantsGene:GLYMA_14G004400
GO:GO:0000176	GO:GO:0000177	GO:GO:0000467	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0017091
GO:GO:0034427	GO:GO:0034473	GO:GO:0034475	GO:GO:0034476	GO:GO:0043928	GO:GO:0071028
GO:GO:0071035	GO:GO:0071038	GO:GO:0071042	InterPro:IPR027408	UniProt:K7M466	EnsemblPlants:KRH14064
ProteinID:KRH14064	ProteinID:KRH14064.1	PFAM:PF01138	InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097	PANTHER:PTHR11097:SF8
InterPro:Ribosomal_S5_D2-typ_fold	SUPFAM:SSF54211	SUPFAM:SSF55666	UniParc:UPI000296EC8D	:	:

Description

hypothetical protein

Coordinates

chr14:-:371125..373052

Molecular Weight (calculated)

26328.6 Da

IEP (calculated)

5.362

GRAVY (calculated)

0.065

Length

248 amino acids

Sequence
(BLAST)

001: MVGLSLGEKH FIQGGIGQDL RCDGRKRFTY KPISVETEVI PQTNGSARVR MGATDVIASA KVVSIYIDCS STAEPAFEGR GGDELAAELS NALQRCLLGG
101: KSGAGARIGL SSLIVVEGKI CWDLYIDGLL VNSDGNLKWL EAALSNTGIP RVQVAAGTSN DEQPEVDVSN EEFLQFDTSG VPVIVTLAKV GTWEALYCGC
201: NIRGGITNKL CCFSVNRQGH ICGITKRGGV GLDPSTILQL FCNSAKLW

Best Arabidopsis Sequence Match ( AT3G07750.2 )
(BLAST)

001: MGLSLGEQHF IKGGIAQDLR TDGRKRLTYR PIYVETGVIP QANGSARVRI GGTDVIASVK AEIGRPSSLQ PDKGKVAVFI DCSPTAEPTF GGRGGEELSS
101: ELALALQRCL LGGKSGAGAG INLSSLLIKE GKVCWDLYID GLVISSDGNL LDALGAAIKA ALTNTAIPKV NVSAEVADDE QPEIDISDEE YLQFDTSSVP
201: VIVTLTKVGT HYIVDATAEE ESQMSSAVSI SVNRTGHICG LTKRSGSGLD PSVILDMISV AKHVTETLMS KLDSEISAAE ACEDES

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9FPI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.