CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70124	Soybean	endoplasmic reticulum, nucleus	97.9	97.9
VIT_04s0008g06260.t01	Wine grape	cytosol	83.22	82.93
PGSC0003DMT400032572	Potato	cytosol	81.47	80.9
EER90439	Sorghum	cytosol	80.77	80.77
AT3G07750.2	Thale cress	cytosol	79.37	79.37
KRH14064	Soybean	cytosol, nucleus, plastid	68.53	79.03
Zm00001d014880_P002	Maize	extracellular	79.02	78.75
Os12t0403800-02	Rice	cytosol	77.97	78.52
OQU78915	Sorghum	cytoskeleton, cytosol, nucleus	78.67	78.4
CDY22130	Canola	cytosol	77.97	77.43
TraesCS7B01G206000.1	Wheat	cytosol	77.27	77.27
TraesCS7A01G305800.1	Wheat	cytosol	77.27	77.27
Bra040025.1-P	Field mustard	cytosol	77.27	76.74
TraesCS7D01G302500.1	Wheat	cytosol	76.57	76.57
Zm00001d014882_P005	Maize	cytosol	71.33	75.84
GSMUA_Achr4P23580_001	Banana	cytosol	80.07	75.83
Bra029674.1-P	Field mustard	cytosol	75.52	73.72
CDY35960	Canola	cytosol	75.52	73.72
Solyc08g007520.2.1	Tomato	nucleus	82.17	71.21
CDY28020	Canola	cytoskeleton, cytosol, nucleus	74.13	67.3
HORVU7Hr1G072710.9	Barley	cytosol, plastid	77.62	67.07
KRH44119	Soybean	plasma membrane	29.02	36.73
KRH01295	Soybean	plastid	9.44	30.0
KRH16280	Soybean	nucleus	28.32	26.38
KRH45053	Soybean	cytosol, nucleus	27.27	25.83
KRH01293	Soybean	cytosol, nucleus	11.19	25.81
KRH77682	Soybean	cytosol	27.27	17.85
KRH27808	Soybean	nucleus	26.92	16.38
KRH01298	Soybean	cytosol, nucleus, plastid	5.94	15.32

Protein Annotations

EntrezGene:100818134	MapMan:16.8.1.1.3	Gene3D:3.30.230.70	EMBL:ACUP02010177	ncoils:Coil	InterPro:ExoRNase_PH_dom1
InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf	EnsemblPlantsGene:GLYMA_16G151700	GO:GO:0000176	GO:GO:0000177	GO:GO:0000467
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0017091	GO:GO:0034427	GO:GO:0034473	GO:GO:0034475
GO:GO:0034476	GO:GO:0043928	GO:GO:0071028	GO:GO:0071035	GO:GO:0071038	GO:GO:0071042
UniProt:I1MNS7	InterPro:IPR027408	ProteinID:KRH08467.1	EnsemblPlants:KRH08468	ProteinID:KRH08468	ProteinID:KRH08468.1
PFAM:PF01138	PFAM:PF03725	InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097	PANTHER:PTHR11097:SF8	InterPro:Ribosomal_S5_D2-typ_fold
SUPFAM:SSF54211	SUPFAM:SSF55666	UniParc:UPI000233BEBD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr16:+:31214533..31219627

Molecular Weight (calculated)

30018.6 Da

IEP (calculated)

4.492

GRAVY (calculated)

-0.011

Length

286 amino acids

Sequence
(BLAST)

001: MVGLSLGETH FIQGGIAQDL RCDGRKRLTY RPISVETGVI PQTNGSARVR MGATDVIASV KAELGKPSLL QPDKGKVSIY VDCSSTAEPA FEGRGGDELA
101: AELSNALQRC LLGGKSGAGA GIDLSSLIVV EGKICWDLYI DGLVVSSDGN LLDALGAAIK AALSNTGIPR VQVAAGTSND EHPEVDVSDE EFLQFDTSRV
201: PVIVTLTKVG RHYIVDATSE EESQMSSAVS ISVNRQGHIC GITKRGGVGL DPSIILDMIS VAKHVSEQLI NKLDSEIASA EAEEES

Best Arabidopsis Sequence Match ( AT3G07750.2 )
(BLAST)

001: MGLSLGEQHF IKGGIAQDLR TDGRKRLTYR PIYVETGVIP QANGSARVRI GGTDVIASVK AEIGRPSSLQ PDKGKVAVFI DCSPTAEPTF GGRGGEELSS
101: ELALALQRCL LGGKSGAGAG INLSSLLIKE GKVCWDLYID GLVISSDGNL LDALGAAIKA ALTNTAIPKV NVSAEVADDE QPEIDISDEE YLQFDTSSVP
201: VIVTLTKVGT HYIVDATAEE ESQMSSAVSI SVNRTGHICG LTKRSGSGLD PSVILDMISV AKHVTETLMS KLDSEISAAE ACEDES

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9FPI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.