Factsheet for PGSC0003DMT400032572

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g007520.2.1	Tomato	nucleus	98.96	86.36
KRH08468	Soybean	cytosol	80.9	81.47
VIT_04s0008g06260.t01	Wine grape	cytosol	79.17	79.44
KRH70124	Soybean	endoplasmic reticulum, nucleus	78.82	79.37
AT3G07750.2	Thale cress	cytosol	76.04	76.57
EER90439	Sorghum	cytosol	75.35	75.87
Zm00001d014880_P002	Maize	extracellular	75.0	75.26
CDY22130	Canola	cytosol	75.0	75.0
Bra040025.1-P	Field mustard	cytosol	74.31	74.31
Os12t0403800-02	Rice	cytosol	72.92	73.94
OQU78915	Sorghum	cytoskeleton, cytosol, nucleus	73.61	73.87
GSMUA_Achr4P23580_001	Banana	cytosol	77.08	73.51
Zm00001d014882_P005	Maize	cytosol	67.71	72.49
TraesCS7A01G305800.1	Wheat	cytosol	71.53	72.03
TraesCS7B01G206000.1	Wheat	cytosol	71.53	72.03
CDY35960	Canola	cytosol	73.26	72.01
Bra029674.1-P	Field mustard	cytosol	73.26	72.01
TraesCS7D01G302500.1	Wheat	cytosol	70.83	71.33
CDY28020	Canola	cytoskeleton, cytosol, nucleus	71.18	65.08
KRH14064	Soybean	cytosol, nucleus, plastid	54.51	63.31
HORVU7Hr1G072710.9	Barley	cytosol, plastid	72.22	62.84
PGSC0003DMT400019417	Potato	cytosol	26.74	25.41
PGSC0003DMT400060984	Potato	golgi	25.35	22.19

Protein Annotations

EntrezGene:102606240	MapMan:16.8.1.1.3	Gene3D:3.30.230.70	ncoils:Coil	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2
InterPro:ExoRNase_PH_dom2_sf	InterPro:IPR027408	UniProt:M1AXN1	PFAM:PF01138	PFAM:PF03725	EnsemblPlantsGene:PGSC0003DMG400012510
PGSC:PGSC0003DMG400012510	EnsemblPlants:PGSC0003DMT400032572	InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097	PANTHER:PTHR11097:SF8	InterPro:Ribosomal_S5_D2-typ_fold
SUPFAM:SSF54211	SUPFAM:SSF55666	UniParc:UPI000294963A	RefSeq:XP_006358364.1	RefSeq:XP_015169391.1	SEG:seg

Description

Exosome complex exonuclease rrp42 [Source:PGSC_GENE;Acc:PGSC0003DMG400012510]

Coordinates

chr8:+:393775..400600

Molecular Weight (calculated)

30442.1 Da

IEP (calculated)

4.544

GRAVY (calculated)

-0.098

Length

288 amino acids

Sequence
(BLAST)

001: MVGLSVGERN FIKGGIAQDL RNDGRKRLTY RPIYVETGVI PQANGSAKVK LGATDVIASV KAELGKPTLS HPDQGKVFIY VECSPTAEPS FEGRGGEELS
101: TELSTALERS LLGGKSGAGA GIDPASLLIK EGKVCWDLYV DCLVISSDGN LLDALGAAIK AALSNTGIPR VQFREAASSD EHADVDVSDE EFLQFDTSGV
201: PVIVTLTKVG RHYIVDATSE EESLMSSAVS ISVNRRGLIC GLTKRGGAGL DPSVILDMIS VAKHASEQLI NKLDSEIEAA ERANEEEP

Best Arabidopsis Sequence Match ( AT3G07750.2 )
(BLAST)

001: MGLSLGEQHF IKGGIAQDLR TDGRKRLTYR PIYVETGVIP QANGSARVRI GGTDVIASVK AEIGRPSSLQ PDKGKVAVFI DCSPTAEPTF GGRGGEELSS
101: ELALALQRCL LGGKSGAGAG INLSSLLIKE GKVCWDLYID GLVISSDGNL LDALGAAIKA ALTNTAIPKV NVSAEVADDE QPEIDISDEE YLQFDTSSVP
201: VIVTLTKVGT HYIVDATAEE ESQMSSAVSI SVNRTGHICG LTKRSGSGLD PSVILDMISV AKHVTETLMS KLDSEISAAE ACEDES

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9FPI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.