CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040025.1-P	Field mustard	cytosol	98.26	98.26
AT3G07750.2	Thale cress	cytosol	92.36	93.01
CDY35960	Canola	cytosol	92.01	90.44
CDY28020	Canola	cytoskeleton, cytosol, nucleus	90.28	82.54
VIT_04s0008g06260.t01	Wine grape	cytosol	78.12	78.4
KRH08468	Soybean	cytosol	77.43	77.97
KRH70124	Soybean	endoplasmic reticulum, nucleus	77.08	77.62
PGSC0003DMT400032572	Potato	cytosol	75.0	75.0
EER90439	Sorghum	cytosol	73.26	73.78
Os12t0403800-02	Rice	cytosol	72.22	73.24
Zm00001d014880_P002	Maize	extracellular	72.57	72.82
GSMUA_Achr4P23580_001	Banana	cytosol	75.69	72.19
OQU78915	Sorghum	cytoskeleton, cytosol, nucleus	71.53	71.78
TraesCS7B01G206000.1	Wheat	cytosol	70.49	70.98
TraesCS7A01G305800.1	Wheat	cytosol	70.49	70.98
TraesCS7D01G302500.1	Wheat	cytosol	69.79	70.28
Zm00001d014882_P005	Maize	cytosol	64.58	69.14
Solyc08g007520.2.1	Tomato	nucleus	75.69	66.06
KRH14064	Soybean	cytosol, nucleus, plastid	53.82	62.5
HORVU7Hr1G072710.9	Barley	cytosol, plastid	70.49	61.33
CDY63123	Canola	cytosol	26.04	24.92
CDY56983	Canola	cytosol	26.04	24.92
CDY70752	Canola	cytosol	27.08	22.16
CDY33620	Canola	cytosol	15.28	22.0
CDX98419	Canola	nucleus	26.74	18.73
CDX67830	Canola	nucleus	26.39	18.49
CDY41161	Canola	cytosol	26.74	17.66
CDX71803	Canola	nucleus	26.39	17.27

Protein Annotations

EnsemblPlants:CDY22130	EnsemblPlantsGene:GSBRNA2T00018520001	Gene3D:3.30.230.70	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf
InterPro:IPR027408	InterPro:PNPase/RNase_PH_dom_sf	InterPro:Ribosomal_S5_D2-typ_fold	PANTHER:PTHR11097	PANTHER:PTHR11097:SF8	PFAM:PF01138
PFAM:PF03725	ProteinID:CDY22130	ProteinID:CDY22130.1	SEG:seg	SUPFAM:SSF54211	SUPFAM:SSF55666
UniParc:UPI0004EE9FA9	UniProt:A0A078G6N6	MapMan:16.8.1.1.3	:	:	:

Description

BnaC01g39710DBnaC01g39710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G6N6]

Coordinates

chrLK032128:+:49764..51590

Molecular Weight (calculated)

30173.7 Da

IEP (calculated)

4.294

GRAVY (calculated)

-0.010

Length

288 amino acids

Sequence
(BLAST)

001: MVGVSFGEQQ FIKGGIAQDL RTDGRKRLTY RDIYVETGVI PQANGSARVR IGGTDVIASV KAEIGRPSSL QPDKGKVAVF IDCSPTAEPT FGGRGGEELS
101: SELALALQIC LLGGKSGAGA GINLSSLLIK EGRVCWDLYI DGLVISSDGN LLDALGAAIK AALTNTAIPK VQVSAEVADD EQPEIDISDE EYQQFDTSSV
201: PVIVTLTKVG NHYIVDATAE EESQMSSAVS ISVNRGGHIC GLTKRGGCGL DPSVILDMIS VAKHVSETLM NNLDSKISAA EACEDDES

Best Arabidopsis Sequence Match ( AT3G07750.2 )
(BLAST)

001: MGLSLGEQHF IKGGIAQDLR TDGRKRLTYR PIYVETGVIP QANGSARVRI GGTDVIASVK AEIGRPSSLQ PDKGKVAVFI DCSPTAEPTF GGRGGEELSS
101: ELALALQRCL LGGKSGAGAG INLSSLLIKE GKVCWDLYID GLVISSDGNL LDALGAAIKA ALTNTAIPKV NVSAEVADDE QPEIDISDEE YLQFDTSSVP
201: VIVTLTKVGT HYIVDATAEE ESQMSSAVSI SVNRTGHICG LTKRSGSGLD PSVILDMISV AKHVTETLMS KLDSEISAAE ACEDES

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9FPI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.