CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89318
CDX94304
CDX97358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60500.1	CDX89318	AT4G26630.1	25387881
AT3G60500.1	CDX94304	AT4G26630.1	25387881
AT3G60500.1	CDX97358	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G12990.1	Thale cress	cytosol	79.55	91.21
CDY41161	Canola	cytosol	98.58	79.59
Bra007540.1-P	Field mustard	nucleus	98.01	79.13
CDX98419	Canola	nucleus	90.34	77.37
CDX71803	Canola	nucleus	96.31	77.05
CDX67830	Canola	nucleus	89.49	76.64
AT3G60500.1	Thale cress	cytosol	92.9	74.66
Zm00001d045898_P001	Maize	cytosol, extracellular	28.12	64.71
GSMUA_Achr8P16380_001	Banana	cytosol	63.35	60.93
Os02t0550700-01	Rice	cytosol	59.38	52.91
GSMUA_Achr6P25490_001	Banana	cytosol	59.94	52.36
TraesCS7A01G457300.1	Wheat	cytosol	58.81	51.75
Solyc05g047420.2.1	Tomato	nucleus	62.5	49.66
KXG30375	Sorghum	nucleus	61.93	48.55
HORVU6Hr1G027570.6	Barley	cytosol	61.65	48.44
HORVU7Hr1G105370.12	Barley	nucleus	61.65	48.44
TraesCS6D01G130400.3	Wheat	cytosol	61.65	48.44
TraesCS6A01G141100.2	Wheat	cytosol	61.65	48.44
Zm00001d016770_P002	Maize	nucleus	61.36	48.43
Zm00001d036997_P001	Maize	cytosol	36.93	48.33
TraesCS7B01G358800.3	Wheat	nucleus	61.36	48.21
TraesCS6B01G169200.2	Wheat	cytosol	61.36	48.21
TraesCS7D01G445900.2	Wheat	nucleus	60.8	47.87
Zm00001d042612_P001	Maize	plastid	33.81	47.22
KRH77682	Soybean	cytosol	58.24	46.91
KRH27808	Soybean	nucleus	58.81	44.04
VIT_18s0072g00880.t01	Wine grape	nucleus	45.74	42.59
Zm00001d002336_P001	Maize	cytosol	20.74	41.48
Zm00001d033842_P001	Maize	cytosol	29.55	33.12
CDY22130	Canola	cytosol	22.16	27.08
CDY35960	Canola	cytosol	22.44	26.96
CDY28020	Canola	cytoskeleton, cytosol, nucleus	23.01	25.71
CDY63123	Canola	cytosol	21.02	24.58
CDY56983	Canola	cytosol	21.02	24.58
CDY33620	Canola	cytosol	11.65	20.5

Protein Annotations

MapMan:16.8.1.1.5	Gene3D:3.30.230.70	UniProt:A0A078JYM4	EnsemblPlants:CDY70752	ProteinID:CDY70752	ProteinID:CDY70752.1
InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf	GO:GO:0000178	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00007296001	InterPro:IPR027408	PFAM:PF01138	PFAM:PF03725	InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097
PANTHER:PTHR11097:SF21	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Rrp45	SUPFAM:SSF54211	SUPFAM:SSF55666	UniParc:UPI0004EE60F2
SEG:seg	:	:	:	:	:

Description

BnaAnng34850DBnaAnng34850D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JYM4]

Coordinates

chrLK043192:+:1255..3003

Molecular Weight (calculated)

39010.7 Da

IEP (calculated)

6.027

GRAVY (calculated)

-0.307

Length

352 amino acids

Sequence
(BLAST)

001: MEGRLANMWR LTVNESKFVE TALQSELRVD GRGLYDYRKL TIKFGKEYGS SEVQLGHTHV MGFVTAQLVQ PYKDRPNEGS LSIFTEFSPM ADPSFEPGRP
101: GESAVELGRI IDRGLRESRA VDTESLCVLA GKKVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGDNSQEV IIHSLEEREP LPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYI EEEVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIREEVEAY NREKNLQKVK RHPTLAKPEV
301: SGPIVVVKEG HKKVSDEEEA AELSREHVER LNLSSVEVKS SKEQEAASNF KG

Best Arabidopsis Sequence Match ( AT3G60500.1 )
(BLAST)

001: MEGRLANMWR LTVNESKFVE TALQSELRVD GRGLYDYRKL TIKFGKEYGS SEVQLGQTHV MGFVTAQLVQ PYKDRPNEGS LSIFTEFSPM ADPSFEPGRP
101: GESAVELGRI IDRGLRESRA VDTESLCVLA GKMVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENGQEV IIHPLEEREP LPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIREEVEAY NCERSLQKVK RHPTLAKSEV
301: SGPTVAVKEE HRKSSDQERA AEISREHVER LKLSTEEVRS SKEEEAANFK GGPSNWDPYS EAMDVDSLKV SLASRGDPVT KSSSTKKMNG SGNAQKVGVE
401: ISVEEVTGEL GKKDTKHKDG EMTLKDAVKP KKKRKNKS

Arabidopsis Description

RRP45BExosome complex component RRP45B [Source:UniProtKB/Swiss-Prot;Acc:Q9M209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.