Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d013757_P010 | |
| Zm00001d033159_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60500.1 | Zm00001d013757_P010 | AT4G26630.1 | 25387881 |
| AT3G60500.1 | Zm00001d033159_P001 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045898_P001 | Maize | cytosol, extracellular | 46.18 | 94.77 |
| Zm00001d002336_P001 | Maize | cytosol | 37.26 | 66.48 |
| Zm00001d036997_P001 | Maize | cytosol | 47.13 | 55.02 |
| Zm00001d042612_P001 | Maize | plastid | 41.4 | 51.59 |
| TraesCS7A01G457300.1 | Wheat | cytosol | 46.5 | 36.5 |
| Os02t0550700-01 | Rice | cytosol | 45.86 | 36.46 |
| Zm00001d016770_P002 | Maize | nucleus | 50.0 | 35.2 |
| KXG30375 | Sorghum | nucleus | 49.68 | 34.74 |
| GSMUA_Achr8P16380_001 | Banana | cytosol | 40.45 | 34.7 |
| VIT_18s0072g00880.t01 | Wine grape | nucleus | 41.4 | 34.39 |
| AT3G12990.1 | Thale cress | cytosol | 33.12 | 33.88 |
| TraesCS7D01G445900.2 | Wheat | nucleus | 47.77 | 33.56 |
| HORVU6Hr1G027570.6 | Barley | cytosol | 47.77 | 33.48 |
| TraesCS7B01G358800.3 | Wheat | nucleus | 47.77 | 33.48 |
| TraesCS6A01G141100.2 | Wheat | cytosol | 47.45 | 33.26 |
| TraesCS6B01G169200.2 | Wheat | cytosol | 47.13 | 33.04 |
| TraesCS6D01G130400.3 | Wheat | cytosol | 47.13 | 33.04 |
| HORVU7Hr1G105370.12 | Barley | nucleus | 47.13 | 33.04 |
| GSMUA_Achr6P25490_001 | Banana | cytosol | 39.17 | 30.52 |
| CDY70752 | Canola | cytosol | 33.12 | 29.55 |
| Solyc05g047420.2.1 | Tomato | nucleus | 40.13 | 28.44 |
| KRH77682 | Soybean | cytosol | 38.22 | 27.46 |
| CDX98419 | Canola | nucleus | 33.44 | 25.55 |
| CDX71803 | Canola | nucleus | 35.35 | 25.23 |
| KRH27808 | Soybean | nucleus | 37.58 | 25.11 |
| CDX67830 | Canola | nucleus | 32.8 | 25.06 |
| Bra003416.1-P | Field mustard | nucleus | 32.8 | 25.06 |
| Bra007540.1-P | Field mustard | nucleus | 34.71 | 25.0 |
| CDY41161 | Canola | cytosol | 34.39 | 24.77 |
| AT3G60500.1 | Thale cress | cytosol | 34.39 | 24.66 |
| Zm00001d049855_P002 | Maize | nucleus | 14.33 | 20.83 |
| Zm00001d014882_P005 | Maize | cytosol | 14.01 | 16.36 |
| Zm00001d014880_P002 | Maize | extracellular | 14.01 | 15.33 |
| Zm00001d031643_P001 | Maize | cytosol | 14.65 | 12.92 |
| Zm00001d021033_P001 | Maize | cytosol | 1.59 | 3.52 |
| Zm00001d049854_P001 | Maize | cytosol | 0.96 | 2.19 |
| Zm00001d044450_P001 | Maize | cytosol | 0.32 | 0.83 |
Protein Annotations
| EnsemblPlants:Zm00001d033842_P001 | EnsemblPlants:Zm00001d033842_T001 | EnsemblPlantsGene:Zm00001d033842 | Gene3D:3.30.230.70 | InterPro:ExoRNase_PH_dom1 | InterPro:ExoRNase_PH_dom2 |
| InterPro:ExoRNase_PH_dom2_sf | InterPro:IPR027408 | InterPro:PNPase/RNase_PH_dom_sf | InterPro:Ribosomal_S5_D2-typ_fold | PANTHER:PTHR11097 | PANTHER:PTHR11097:SF21 |
| PFAM:PF01138 | PFAM:PF03725 | ProteinID:ONM08750.1 | SEG:seg | SUPFAM:SSF54211 | SUPFAM:SSF55666 |
| UniParc:UPI00097CDA02 | UniProt:A0A1R3MJK5 | MapMan:16.8.1.1.5 | : | : | : |
Description
Exosome complex component RRP45B
Coordinates
chr1:+:275497344..275503371
Molecular Weight (calculated)
33768.6 Da
IEP (calculated)
4.822
GRAVY (calculated)
0.048
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFLCVVAGK HVWSVRVDLH ILDNGGNLID AANIAALAAL STFWRPECTV GGDDGQQVTV HDPEVRDPLP LTIHHMPIAV TFAYFGEGNI VVLDPTYKEE
101: AVMGGRMTAI VNSNGDVCAI QKAGGEGLMS SVTMQCLRIA SVKATDITSK IKKAVLIWDV EAQPNRHAVL GSSESRPDLI LTGHKENAEF ALAMCPAEPY
201: VLSGDVEDEK MAAWKALGAM LLVQLFNTGK ACACAECTKD KTGCRDMGDD GDWIGVNKGF NSDAVLAMET IHSLSASKSS YPMADLTQLF MTATQEGKRS
301: ESQGQILRVV SLFF
101: AVMGGRMTAI VNSNGDVCAI QKAGGEGLMS SVTMQCLRIA SVKATDITSK IKKAVLIWDV EAQPNRHAVL GSSESRPDLI LTGHKENAEF ALAMCPAEPY
201: VLSGDVEDEK MAAWKALGAM LLVQLFNTGK ACACAECTKD KTGCRDMGDD GDWIGVNKGF NSDAVLAMET IHSLSASKSS YPMADLTQLF MTATQEGKRS
301: ESQGQILRVV SLFF
001: MEGRLNNMWR LTVNESKFVE SALQSELRVD GRGLYDYRKL TIKFGKEYGS SQVQLGQTHV MAFVTAQLVQ PYKDRPSEGS FSIFTEFSPM ADPSFEPGHP
101: GESAVELGRI IDRALRESRA VDTESLCVLA GKLVWSVRID LHILDNGGNL VDAANVAALA ALMTFRRPDC TVGGDNSQDV IIHPPEEREP LPLIIHHLPI
201: AFTFGFFNKG SILVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRASATT KIIRDAVEAY NRERSSQKVK RHHTLAKSEV
301: LGPIVVV
101: GESAVELGRI IDRALRESRA VDTESLCVLA GKLVWSVRID LHILDNGGNL VDAANVAALA ALMTFRRPDC TVGGDNSQDV IIHPPEEREP LPLIIHHLPI
201: AFTFGFFNKG SILVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRASATT KIIRDAVEAY NRERSSQKVK RHHTLAKSEV
301: LGPIVVV
Arabidopsis Description
RRP45AExosome complex component RRP45A [Source:UniProtKB/Swiss-Prot;Acc:Q9LDM2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.