Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70752 | Canola | cytosol | 91.21 | 79.55 |
| Bra003416.1-P | Field mustard | nucleus | 90.88 | 67.88 |
| CDX67830 | Canola | nucleus | 90.88 | 67.88 |
| CDX98419 | Canola | nucleus | 90.88 | 67.88 |
| AT3G60500.1 | Thale cress | cytosol | 91.86 | 64.38 |
| Bra007540.1-P | Field mustard | nucleus | 90.23 | 63.53 |
| CDY41161 | Canola | cytosol | 90.23 | 63.53 |
| Zm00001d045898_P001 | Maize | cytosol, extracellular | 31.6 | 63.4 |
| CDX71803 | Canola | nucleus | 90.23 | 62.95 |
| GSMUA_Achr8P16380_001 | Banana | cytosol | 67.75 | 56.83 |
| TraesCS7A01G457300.1 | Wheat | cytosol | 64.17 | 49.25 |
| GSMUA_Achr6P25490_001 | Banana | cytosol | 64.5 | 49.13 |
| Os02t0550700-01 | Rice | cytosol | 63.19 | 49.11 |
| Solyc05g047420.2.1 | Tomato | nucleus | 68.4 | 47.4 |
| Zm00001d036997_P001 | Maize | cytosol | 41.37 | 47.21 |
| Zm00001d042612_P001 | Maize | plastid | 38.44 | 46.83 |
| KRH77682 | Soybean | cytosol | 65.47 | 46.0 |
| KXG30375 | Sorghum | nucleus | 65.47 | 44.77 |
| TraesCS7B01G358800.3 | Wheat | nucleus | 65.15 | 44.64 |
| HORVU7Hr1G105370.12 | Barley | nucleus | 65.15 | 44.64 |
| Zm00001d016770_P002 | Maize | nucleus | 64.82 | 44.62 |
| TraesCS7D01G445900.2 | Wheat | nucleus | 64.82 | 44.52 |
| TraesCS6A01G141100.2 | Wheat | cytosol | 64.82 | 44.42 |
| TraesCS6B01G169200.2 | Wheat | cytosol | 64.5 | 44.2 |
| TraesCS6D01G130400.3 | Wheat | cytosol | 64.5 | 44.2 |
| HORVU6Hr1G027570.6 | Barley | cytosol | 64.5 | 44.2 |
| Zm00001d002336_P001 | Maize | cytosol | 24.1 | 42.05 |
| KRH27808 | Soybean | nucleus | 64.17 | 41.91 |
| VIT_18s0072g00880.t01 | Wine grape | nucleus | 47.23 | 38.36 |
| Zm00001d033842_P001 | Maize | cytosol | 33.88 | 33.12 |
| AT3G07750.2 | Thale cress | cytosol | 25.08 | 26.92 |
| AT1G60080.1 | Thale cress | cytosol | 24.1 | 24.5 |
Protein Annotations
| MapMan:16.8.1.1.5 | Gene3D:3.30.230.70 | EntrezGene:820485 | ProteinID:AEE75271.1 | ProteinID:AEE75273.1 | EMBL:AK227231 |
| ArrayExpress:AT3G12990 | EnsemblPlantsGene:AT3G12990 | RefSeq:AT3G12990 | TAIR:AT3G12990 | RefSeq:AT3G12990-TAIR-G | EnsemblPlants:AT3G12990.1 |
| TAIR:AT3G12990.1 | EMBL:AY084328 | Unigene:At.11988 | ProteinID:BAB02509.1 | EMBL:BT003077 | InterPro:ExoRNase_PH_dom1 |
| InterPro:ExoRNase_PH_dom2 | InterPro:ExoRNase_PH_dom2_sf | GO:GO:0000175 | GO:GO:0000176 | GO:GO:0000177 | GO:GO:0000178 |
| GO:GO:0000467 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0017091 | GO:GO:0034427 | GO:GO:0034473 | GO:GO:0034475 | GO:GO:0034476 |
| GO:GO:0043928 | GO:GO:0071028 | GO:GO:0071035 | GO:GO:0071038 | GO:GO:0071042 | InterPro:IPR027408 |
| RefSeq:NP_001189874.1 | RefSeq:NP_566441.1 | PFAM:PF01138 | PFAM:PF03725 | InterPro:PNPase/RNase_PH_dom_sf | PO:PO:0000293 |
| PANTHER:PTHR11097 | PANTHER:PTHR11097:SF21 | UniProt:Q9LDM2 | Symbol:RRP45a | InterPro:Ribosomal_S5_D2-typ_fold | InterPro:Rrp45 |
| SUPFAM:SSF54211 | SUPFAM:SSF55666 | UniParc:UPI000000BECD | SEG:seg | : | : |
Description
RRP45AExosome complex component RRP45A [Source:UniProtKB/Swiss-Prot;Acc:Q9LDM2]
Coordinates
chr3:+:4156198..4158004
Molecular Weight (calculated)
33876.7 Da
IEP (calculated)
6.602
GRAVY (calculated)
-0.124
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGRLNNMWR LTVNESKFVE SALQSELRVD GRGLYDYRKL TIKFGKEYGS SQVQLGQTHV MAFVTAQLVQ PYKDRPSEGS FSIFTEFSPM ADPSFEPGHP
101: GESAVELGRI IDRALRESRA VDTESLCVLA GKLVWSVRID LHILDNGGNL VDAANVAALA ALMTFRRPDC TVGGDNSQDV IIHPPEEREP LPLIIHHLPI
201: AFTFGFFNKG SILVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRASATT KIIRDAVEAY NRERSSQKVK RHHTLAKSEV
301: LGPIVVV
101: GESAVELGRI IDRALRESRA VDTESLCVLA GKLVWSVRID LHILDNGGNL VDAANVAALA ALMTFRRPDC TVGGDNSQDV IIHPPEEREP LPLIIHHLPI
201: AFTFGFFNKG SILVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRASATT KIIRDAVEAY NRERSSQKVK RHHTLAKSEV
301: LGPIVVV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.