Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22130 | Canola | cytosol | 93.01 | 92.36 |
| Bra040025.1-P | Field mustard | cytosol | 92.66 | 92.01 |
| Bra029674.1-P | Field mustard | cytosol | 90.56 | 88.4 |
| CDY35960 | Canola | cytosol | 90.56 | 88.4 |
| CDY28020 | Canola | cytoskeleton, cytosol, nucleus | 88.81 | 80.63 |
| VIT_04s0008g06260.t01 | Wine grape | cytosol | 80.07 | 79.79 |
| KRH08468 | Soybean | cytosol | 79.37 | 79.37 |
| KRH70124 | Soybean | endoplasmic reticulum, nucleus | 78.32 | 78.32 |
| PGSC0003DMT400032572 | Potato | cytosol | 76.57 | 76.04 |
| EER90439 | Sorghum | cytosol | 75.52 | 75.52 |
| Os12t0403800-02 | Rice | cytosol | 74.13 | 74.65 |
| Zm00001d014880_P002 | Maize | extracellular | 74.83 | 74.56 |
| OQU78915 | Sorghum | cytoskeleton, cytosol, nucleus | 74.48 | 74.22 |
| GSMUA_Achr4P23580_001 | Banana | cytosol | 77.62 | 73.51 |
| TraesCS7B01G206000.1 | Wheat | cytosol | 71.68 | 71.68 |
| TraesCS7A01G305800.1 | Wheat | cytosol | 71.68 | 71.68 |
| Zm00001d014882_P005 | Maize | cytosol | 66.78 | 71.0 |
| TraesCS7D01G302500.1 | Wheat | cytosol | 70.98 | 70.98 |
| Solyc08g007520.2.1 | Tomato | nucleus | 77.27 | 66.97 |
| KRH14064 | Soybean | cytosol, nucleus, plastid | 55.24 | 63.71 |
| HORVU7Hr1G072710.9 | Barley | cytosol, plastid | 72.03 | 62.24 |
| AT3G12990.1 | Thale cress | cytosol | 26.92 | 25.08 |
| AT1G60080.1 | Thale cress | cytosol | 25.52 | 24.17 |
| AT3G60500.1 | Thale cress | cytosol | 27.62 | 18.04 |
Protein Annotations
| MapMan:16.8.1.1.3 | Gene3D:3.30.230.70 | EntrezGene:819966 | ProteinID:AEE74598.1 | ProteinID:AEE74599.1 | EMBL:AF325018 |
| EMBL:AK119005 | ArrayExpress:AT3G07750 | EnsemblPlantsGene:AT3G07750 | RefSeq:AT3G07750 | TAIR:AT3G07750 | RefSeq:AT3G07750-TAIR-G |
| EnsemblPlants:AT3G07750.2 | TAIR:AT3G07750.2 | Unigene:At.18345 | EMBL:BT020424 | InterPro:ExoRNase_PH_dom1 | InterPro:ExoRNase_PH_dom2 |
| InterPro:ExoRNase_PH_dom2_sf | GO:GO:0000176 | GO:GO:0000177 | GO:GO:0000467 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0017091 | GO:GO:0034427 | GO:GO:0034473 | GO:GO:0034475 | GO:GO:0034476 | GO:GO:0043928 |
| GO:GO:0071028 | GO:GO:0071035 | GO:GO:0071038 | GO:GO:0071042 | InterPro:IPR027408 | RefSeq:NP_001319497.1 |
| RefSeq:NP_566318.1 | PFAM:PF01138 | PFAM:PF03725 | InterPro:PNPase/RNase_PH_dom_sf | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR11097 | PANTHER:PTHR11097:SF8 | UniProt:Q9FPI0 |
| InterPro:Ribosomal_S5_D2-typ_fold | SUPFAM:SSF54211 | SUPFAM:SSF55666 | UniParc:UPI00000AC311 | SEG:seg | : |
Description
3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9FPI0]
Coordinates
chr3:+:2473194..2475536
Molecular Weight (calculated)
29963.6 Da
IEP (calculated)
4.436
GRAVY (calculated)
-0.001
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLSLGEQHF IKGGIAQDLR TDGRKRLTYR PIYVETGVIP QANGSARVRI GGTDVIASVK AEIGRPSSLQ PDKGKVAVFI DCSPTAEPTF GGRGGEELSS
101: ELALALQRCL LGGKSGAGAG INLSSLLIKE GKVCWDLYID GLVISSDGNL LDALGAAIKA ALTNTAIPKV NVSAEVADDE QPEIDISDEE YLQFDTSSVP
201: VIVTLTKVGT HYIVDATAEE ESQMSSAVSI SVNRTGHICG LTKRSGSGLD PSVILDMISV AKHVTETLMS KLDSEISAAE ACEDES
101: ELALALQRCL LGGKSGAGAG INLSSLLIKE GKVCWDLYID GLVISSDGNL LDALGAAIKA ALTNTAIPKV NVSAEVADDE QPEIDISDEE YLQFDTSSVP
201: VIVTLTKVGT HYIVDATAEE ESQMSSAVSI SVNRTGHICG LTKRSGSGLD PSVILDMISV AKHVTETLMS KLDSEISAAE ACEDES
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.