Factsheet for Os12t0403800-02

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90439	Sorghum	cytosol	91.55	90.91
Zm00001d014880_P002	Maize	extracellular	90.49	89.55
OQU78915	Sorghum	cytoskeleton, cytosol, nucleus	89.08	88.15
TraesCS7D01G302500.1	Wheat	cytosol	87.68	87.06
TraesCS7B01G206000.1	Wheat	cytosol	87.68	87.06
TraesCS7A01G305800.1	Wheat	cytosol	87.68	87.06
Zm00001d014882_P005	Maize	cytosol	81.34	85.87
VIT_04s0008g06260.t01	Wine grape	cytosol	78.87	78.05
KRH08468	Soybean	cytosol	78.52	77.97
KRH70124	Soybean	endoplasmic reticulum, nucleus	77.46	76.92
GSMUA_Achr4P23580_001	Banana	cytosol	81.69	76.82
HORVU7Hr1G072710.9	Barley	cytosol, plastid	88.03	75.53
AT3G07750.2	Thale cress	cytosol	74.65	74.13
PGSC0003DMT400032572	Potato	cytosol	73.94	72.92
CDY22130	Canola	cytosol	73.24	72.22
Bra040025.1-P	Field mustard	cytosol	73.24	72.22
CDY35960	Canola	cytosol	70.42	68.26
Bra029674.1-P	Field mustard	cytosol	70.42	68.26
Solyc08g007520.2.1	Tomato	nucleus	75.0	64.55
CDY28020	Canola	cytoskeleton, cytosol, nucleus	69.72	62.86
KRH14064	Soybean	cytosol, nucleus, plastid	54.58	62.5
Os11t0311300-03	Rice	cytosol	26.06	24.18
Os02t0550700-01	Rice	cytosol	31.34	22.53

Protein Annotations

MapMan:16.8.1.1.3	Gene3D:3.30.230.70	EntrezGene:4352037	ProteinID:ABA97522.2	EMBL:AK064189	ProteinID:BAF29641.1
ProteinID:BAT16821.1	ProteinID:EEE69246.1	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf	GO:GO:0000176
GO:GO:0000177	GO:GO:0000467	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0017091	GO:GO:0034427
GO:GO:0034473	GO:GO:0034475	GO:GO:0034476	GO:GO:0043928	GO:GO:0071028	GO:GO:0071035
GO:GO:0071038	GO:GO:0071042	InterPro:IPR027408	EnsemblPlantsGene:Os12g0403800	EnsemblPlants:Os12t0403800-02	PFAM:PF01138
PFAM:PF03725	InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097	PANTHER:PTHR11097:SF8	UniProt:Q2QT85	InterPro:Ribosomal_S5_D2-typ_fold
SUPFAM:SSF54211	SUPFAM:SSF55666	UniParc:UPI0000D89D36	RefSeq:XP_015620528.1	:	:

Description

Similar to Exosome complex exonuclease RRP42. (Os12t0403800-01);Exoribonuclease domain containing protein. (Os12t0403800-02)

Coordinates

chr12:+:12075143..12087665

Molecular Weight (calculated)

29896.7 Da

IEP (calculated)

4.739

GRAVY (calculated)

0.102

Length

284 amino acids

Sequence
(BLAST)

001: MVGLSEGEKH FIRGGIAQDL RTDGRRRLQF RAISVETGVI PQANGSARVR LGATEVIATV KAELGKPSIL HPDKGKVSIF VDCSPTAAPM FEGRGSEEFS
101: AELCVALQRC LLGGKSGAGA AIDLSSLIVV DGKVCWDLYI DGLVVSSDGN LLDALAAAIK VALSDTGIPK VNVSLSATTD EEPEVNVSDE EFLQFDTSSV
201: PVIVTLTKVG KHYIVDATSE EESQMSSAVS VSVNRHGQIR GLTKRGGAGL DPSVIFDMIS VAKHVSRQFI SVLDSETLAA EAAE

Best Arabidopsis Sequence Match ( AT3G07750.2 )
(BLAST)

001: MGLSLGEQHF IKGGIAQDLR TDGRKRLTYR PIYVETGVIP QANGSARVRI GGTDVIASVK AEIGRPSSLQ PDKGKVAVFI DCSPTAEPTF GGRGGEELSS
101: ELALALQRCL LGGKSGAGAG INLSSLLIKE GKVCWDLYID GLVISSDGNL LDALGAAIKA ALTNTAIPKV NVSAEVADDE QPEIDISDEE YLQFDTSSVP
201: VIVTLTKVGT HYIVDATAEE ESQMSSAVSI SVNRTGHICG LTKRSGSGLD PSVILDMISV AKHVTETLMS KLDSEISAAE ACEDES

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9FPI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.