CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
cytoskeleton 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35960	Canola	cytosol	85.08	91.47
CDY22130	Canola	cytosol	82.54	90.28
AT3G07750.2	Thale cress	cytosol	80.63	88.81
VIT_04s0008g06260.t01	Wine grape	cytosol	68.25	74.91
KRH08468	Soybean	cytosol	67.3	74.13
KRH70124	Soybean	endoplasmic reticulum, nucleus	66.67	73.43
PGSC0003DMT400032572	Potato	cytosol	65.08	71.18
EER90439	Sorghum	cytosol	64.13	70.63
Os12t0403800-02	Rice	cytosol	62.86	69.72
Zm00001d014880_P002	Maize	extracellular	63.17	69.34
GSMUA_Achr4P23580_001	Banana	cytosol	66.03	68.87
OQU78915	Sorghum	cytoskeleton, cytosol, nucleus	62.22	68.29
TraesCS7B01G206000.1	Wheat	cytosol	61.9	68.18
TraesCS7A01G305800.1	Wheat	cytosol	61.59	67.83
TraesCS7D01G302500.1	Wheat	cytosol	61.27	67.48
Zm00001d014882_P005	Maize	cytosol	57.14	66.91
Solyc08g007520.2.1	Tomato	nucleus	65.71	62.73
KRH14064	Soybean	cytosol, nucleus, plastid	46.98	59.68
HORVU7Hr1G072710.9	Barley	cytosol, plastid	61.59	58.61
CDY63123	Canola	cytosol	23.17	24.25
CDY56983	Canola	cytosol	23.17	24.25
CDY70752	Canola	cytosol	25.71	23.01
CDY33620	Canola	cytosol	13.33	21.0
CDX98419	Canola	nucleus	25.4	19.46
CDX67830	Canola	nucleus	25.08	19.22
CDY41161	Canola	cytosol	25.4	18.35
CDX71803	Canola	nucleus	25.4	18.18

Protein Annotations

EnsemblPlants:CDY28020	EnsemblPlantsGene:GSBRNA2T00038955001	Gene3D:3.30.230.70	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf
InterPro:IPR027408	InterPro:PNPase/RNase_PH_dom_sf	InterPro:Ribosomal_S5_D2-typ_fold	PANTHER:PTHR11097	PANTHER:PTHR11097:SF8	PFAM:PF01138
PFAM:PF03725	ProteinID:CDY28020	ProteinID:CDY28020.1	SEG:seg	SUPFAM:SSF54211	SUPFAM:SSF55666
UniParc:UPI0004EE0FFA	UniProt:A0A078GNC9	MapMan:16.8.1.1.3	:	:	:

Description

BnaC05g44220DBnaC05g44220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNC9]

Coordinates

chrLK032213:-:282949..284532

Molecular Weight (calculated)

33562.2 Da

IEP (calculated)

5.877

GRAVY (calculated)

-0.057

Length

315 amino acids

Sequence
(BLAST)

001: MVACSVGEQH FLKGGIAQEL RTDGRKRLTY RHTYVETGVI PQANGSARVR IGGTDVIASV KAEIGRPSSL QPDKGKVAVF IDCSPTAEPT FGGRGGEELS
101: SELALALQKC LLGGKSGAGA GINLSSLLIK EGRVCWDLYI DGLVISSDGN LLDALSAAIK AALTNTALPK VQVSAEVADD EQPEIDISDE EYQQFGTSSV
201: PIIVTLTKVG EHYIVDATEE EESQMSSAVS ISVNRAGHIC GLTKRGGSGL DQSVILDMIS VAKHVSETLM NKLDSKISKI HKQLVDSIVY GSLFKVEIKH
301: NKLHEKIVIS FGSRD

Best Arabidopsis Sequence Match ( AT3G07750.2 )
(BLAST)

001: MGLSLGEQHF IKGGIAQDLR TDGRKRLTYR PIYVETGVIP QANGSARVRI GGTDVIASVK AEIGRPSSLQ PDKGKVAVFI DCSPTAEPTF GGRGGEELSS
101: ELALALQRCL LGGKSGAGAG INLSSLLIKE GKVCWDLYID GLVISSDGNL LDALGAAIKA ALTNTAIPKV NVSAEVADDE QPEIDISDEE YLQFDTSSVP
201: VIVTLTKVGT HYIVDATAEE ESQMSSAVSI SVNRTGHICG LTKRSGSGLD PSVILDMISV AKHVTETLMS KLDSEISAAE ACEDES

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9FPI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.