CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89318
CDX94304
CDX97358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60500.1	CDX89318	AT4G26630.1	25387881
AT3G60500.1	CDX94304	AT4G26630.1	25387881
AT3G60500.1	CDX97358	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70752	Canola	cytosol	79.59	98.58
Bra007540.1-P	Field mustard	nucleus	97.71	97.71
CDX71803	Canola	nucleus	96.33	95.45
AT3G12990.1	Thale cress	cytosol	63.53	90.23
AT3G60500.1	Thale cress	cytosol	89.45	89.04
CDX98419	Canola	nucleus	77.29	82.0
CDX67830	Canola	nucleus	77.06	81.75
Zm00001d045898_P001	Maize	cytosol, extracellular	22.25	63.4
GSMUA_Achr8P16380_001	Banana	cytosol	52.29	62.3
Os02t0550700-01	Rice	cytosol	50.69	55.95
Solyc05g047420.2.1	Tomato	nucleus	56.65	55.76
GSMUA_Achr6P25490_001	Banana	cytosol	50.23	54.34
TraesCS7A01G457300.1	Wheat	cytosol	49.54	54.0
Zm00001d016770_P002	Maize	nucleus	54.36	53.14
TraesCS7B01G358800.3	Wheat	nucleus	54.13	52.68
HORVU7Hr1G105370.12	Barley	nucleus	54.13	52.68
KXG30375	Sorghum	nucleus	54.13	52.56
HORVU6Hr1G027570.6	Barley	cytosol	53.9	52.46
TraesCS6A01G141100.2	Wheat	cytosol	53.9	52.46
TraesCS7D01G445900.2	Wheat	nucleus	53.67	52.35
TraesCS6D01G130400.3	Wheat	cytosol	53.67	52.23
TraesCS6B01G169200.2	Wheat	cytosol	53.67	52.23
VIT_18s0072g00880.t01	Wine grape	nucleus	44.72	51.59
KRH77682	Soybean	cytosol	51.61	51.49
KRH27808	Soybean	nucleus	52.52	48.72
Zm00001d036997_P001	Maize	cytosol	29.59	47.96
Zm00001d042612_P001	Maize	plastid	26.83	46.43
Zm00001d002336_P001	Maize	cytosol	16.51	40.91
Zm00001d033842_P001	Maize	cytosol	24.77	34.39
CDY22130	Canola	cytosol	17.66	26.74
CDY35960	Canola	cytosol	17.89	26.62
CDY28020	Canola	cytoskeleton, cytosol, nucleus	18.35	25.4
CDY63123	Canola	cytosol	16.74	24.25
CDY56983	Canola	cytosol	16.74	24.25
CDY33620	Canola	cytosol	9.17	20.0

Protein Annotations

MapMan:16.8.1.1.5	Gene3D:3.30.230.70	UniProt:A0A078HTZ4	EnsemblPlants:CDY41161	ProteinID:CDY41161	ProteinID:CDY41161.1
InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf	GO:GO:0000178	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00072564001	InterPro:IPR027408	PFAM:PF01138	PFAM:PF03725	InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097
PANTHER:PTHR11097:SF21	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Rrp45	SUPFAM:SSF54211	SUPFAM:SSF55666	UniParc:UPI0004EEB578
SEG:seg	:	:	:	:	:

Description

BnaA09g38540DBnaA09g38540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTZ4]

Coordinates

chrLK032492:-:118998..121490

Molecular Weight (calculated)

48252.5 Da

IEP (calculated)

6.860

GRAVY (calculated)

-0.492

Length

436 amino acids

Sequence
(BLAST)

001: MEGRLANMWR LTVNESKFVE TALQSELRVD GRGLYDYRKL TIKFGKEYGS SEVQLGQTHV MGFVTAQLVQ PYKDRPNEGS LSIFTEFSPM ADPSFEPGRP
101: GEYAVELGRI IDRGLRESRA VDTESLCVLA GKKVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENNQEV IIHSLEEREP VPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYI EEEVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIREEVEAY NREKNLQKVK RHPTLAKPEV
301: SGPIVVVKEG HKKVSDEEEA AELSREHVER LNLSSVEVKS SKEQEAASNF KGGPSNWDPY TEAMDVDSLK ASLASKGESV TKSTIKKKTN DSGNVQKEVT
401: GDLEMKDTAE ATKHKTGELT LKDAVKPKKK RKNKSN

Best Arabidopsis Sequence Match ( AT3G60500.1 )
(BLAST)

001: MEGRLANMWR LTVNESKFVE TALQSELRVD GRGLYDYRKL TIKFGKEYGS SEVQLGQTHV MGFVTAQLVQ PYKDRPNEGS LSIFTEFSPM ADPSFEPGRP
101: GESAVELGRI IDRGLRESRA VDTESLCVLA GKMVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENGQEV IIHPLEEREP LPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIREEVEAY NCERSLQKVK RHPTLAKSEV
301: SGPTVAVKEE HRKSSDQERA AEISREHVER LKLSTEEVRS SKEEEAANFK GGPSNWDPYS EAMDVDSLKV SLASRGDPVT KSSSTKKMNG SGNAQKVGVE
401: ISVEEVTGEL GKKDTKHKDG EMTLKDAVKP KKKRKNKS

Arabidopsis Description

RRP45BExosome complex component RRP45B [Source:UniProtKB/Swiss-Prot;Acc:Q9M209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.