Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70752 | Canola | cytosol | 74.66 | 92.9 |
| AT3G12990.1 | Thale cress | cytosol | 64.38 | 91.86 |
| CDY41161 | Canola | cytosol | 89.04 | 89.45 |
| Bra007540.1-P | Field mustard | nucleus | 88.36 | 88.76 |
| CDX71803 | Canola | nucleus | 88.58 | 88.18 |
| CDX98419 | Canola | nucleus | 75.34 | 80.29 |
| Bra003416.1-P | Field mustard | nucleus | 75.11 | 80.05 |
| CDX67830 | Canola | nucleus | 75.11 | 80.05 |
| Zm00001d045898_P001 | Maize | cytosol, extracellular | 22.83 | 65.36 |
| GSMUA_Achr8P16380_001 | Banana | cytosol | 52.97 | 63.39 |
| Solyc05g047420.2.1 | Tomato | nucleus | 57.99 | 57.34 |
| Os02t0550700-01 | Rice | cytosol | 50.68 | 56.2 |
| TraesCS7A01G457300.1 | Wheat | cytosol | 50.91 | 55.75 |
| GSMUA_Achr6P25490_001 | Banana | cytosol | 50.46 | 54.84 |
| Zm00001d016770_P002 | Maize | nucleus | 55.02 | 54.04 |
| KXG30375 | Sorghum | nucleus | 54.79 | 53.45 |
| HORVU7Hr1G105370.12 | Barley | nucleus | 54.57 | 53.35 |
| TraesCS7B01G358800.3 | Wheat | nucleus | 54.57 | 53.35 |
| TraesCS7D01G445900.2 | Wheat | nucleus | 54.34 | 53.24 |
| TraesCS6A01G141100.2 | Wheat | cytosol | 54.11 | 52.9 |
| TraesCS6B01G169200.2 | Wheat | cytosol | 53.88 | 52.68 |
| TraesCS6D01G130400.3 | Wheat | cytosol | 53.88 | 52.68 |
| HORVU6Hr1G027570.6 | Barley | cytosol | 53.88 | 52.68 |
| VIT_18s0072g00880.t01 | Wine grape | nucleus | 45.43 | 52.65 |
| KRH77682 | Soybean | cytosol | 51.83 | 51.95 |
| Zm00001d036997_P001 | Maize | cytosol | 30.37 | 49.44 |
| KRH27808 | Soybean | nucleus | 52.05 | 48.51 |
| Zm00001d042612_P001 | Maize | plastid | 27.4 | 47.62 |
| Zm00001d002336_P001 | Maize | cytosol | 17.35 | 43.18 |
| Zm00001d033842_P001 | Maize | cytosol | 24.66 | 34.39 |
| AT3G07750.2 | Thale cress | cytosol | 18.04 | 27.62 |
| AT1G60080.1 | Thale cress | cytosol | 16.89 | 24.5 |
Protein Annotations
| MapMan:16.8.1.1.5 | Gene3D:3.30.230.70 | EntrezGene:820485 | EntrezGene:825221 | UniProt:A0A178VP45 | ProteinID:ABI31441.1 |
| ProteinID:AEE75271.1 | ProteinID:AEE75273.1 | ProteinID:AEE80068.1 | ProteinID:AEE80069.1 | ProteinID:AEE80070.1 | EMBL:AK227231 |
| ProteinID:ANM65751.1 | ArrayExpress:AT3G60500 | EnsemblPlantsGene:AT3G60500 | RefSeq:AT3G60500 | TAIR:AT3G60500 | RefSeq:AT3G60500-TAIR-G |
| EnsemblPlants:AT3G60500.1 | TAIR:AT3G60500.1 | EMBL:AY084328 | Unigene:At.34436 | ProteinID:BAB02509.1 | EMBL:BT003077 |
| EMBL:BT004196 | EMBL:BT005701 | ProteinID:CAB81836.1 | Symbol:CER7 | ncoils:Coil | InterPro:ExoRNase_PH_dom1 |
| InterPro:ExoRNase_PH_dom2 | InterPro:ExoRNase_PH_dom2_sf | GO:GO:0000175 | GO:GO:0000176 | GO:GO:0000177 | GO:GO:0000178 |
| GO:GO:0000467 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0017091 | GO:GO:0034427 | GO:GO:0034473 |
| GO:GO:0034475 | GO:GO:0034476 | GO:GO:0043928 | GO:GO:0071028 | GO:GO:0071035 | GO:GO:0071038 |
| GO:GO:0071042 | InterPro:IPR027408 | RefSeq:NP_001189874.1 | RefSeq:NP_001190143.1 | RefSeq:NP_001327698.1 | RefSeq:NP_191609.1 |
| RefSeq:NP_566441.1 | RefSeq:NP_974466.1 | ProteinID:OAP03885.1 | ProteinID:OAP06632.1 | PFAM:PF01138 | PFAM:PF03725 |
| InterPro:PNPase/RNase_PH_dom_sf | PO:PO:0000293 | PANTHER:PTHR11097 | PANTHER:PTHR11097:SF21 | UniProt:Q9M209 | InterPro:Ribosomal_S5_D2-typ_fold |
| InterPro:Rrp45 | SUPFAM:SSF54211 | SUPFAM:SSF55666 | UniParc:UPI000000C2D7 | SEG:seg | : |
Description
RRP45BExosome complex component RRP45B [Source:UniProtKB/Swiss-Prot;Acc:Q9M209]
Coordinates
chr3:+:22353900..22356849
Molecular Weight (calculated)
48298.6 Da
IEP (calculated)
6.856
GRAVY (calculated)
-0.475
Length
438 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGRLANMWR LTVNESKFVE TALQSELRVD GRGLYDYRKL TIKFGKEYGS SEVQLGQTHV MGFVTAQLVQ PYKDRPNEGS LSIFTEFSPM ADPSFEPGRP
101: GESAVELGRI IDRGLRESRA VDTESLCVLA GKMVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENGQEV IIHPLEEREP LPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIREEVEAY NCERSLQKVK RHPTLAKSEV
301: SGPTVAVKEE HRKSSDQERA AEISREHVER LKLSTEEVRS SKEEEAANFK GGPSNWDPYS EAMDVDSLKV SLASRGDPVT KSSSTKKMNG SGNAQKVGVE
401: ISVEEVTGEL GKKDTKHKDG EMTLKDAVKP KKKRKNKS
101: GESAVELGRI IDRGLRESRA VDTESLCVLA GKMVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENGQEV IIHPLEEREP LPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIREEVEAY NCERSLQKVK RHPTLAKSEV
301: SGPTVAVKEE HRKSSDQERA AEISREHVER LKLSTEEVRS SKEEEAANFK GGPSNWDPYS EAMDVDSLKV SLASRGDPVT KSSSTKKMNG SGNAQKVGVE
401: ISVEEVTGEL GKKDTKHKDG EMTLKDAVKP KKKRKNKS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.