Factsheet for Zm00001d045898_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013757_P010
Zm00001d033159_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60500.1	Zm00001d013757_P010	AT4G26630.1	25387881
AT3G60500.1	Zm00001d033159_P001	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002336_P001	Maize	cytosol	71.24	61.93
Zm00001d036997_P001	Maize	cytosol	92.16	52.42
Zm00001d042612_P001	Maize	plastid	85.62	51.98
Zm00001d033842_P001	Maize	cytosol	94.77	46.18
Os02t0550700-01	Rice	cytosol	89.54	34.68
TraesCS7A01G457300.1	Wheat	cytosol	87.58	33.5
Zm00001d016770_P002	Maize	nucleus	94.77	32.51
GSMUA_Achr8P16380_001	Banana	cytosol	76.47	31.97
KXG30375	Sorghum	nucleus	93.46	31.85
AT3G12990.1	Thale cress	cytosol	63.4	31.6
TraesCS7B01G358800.3	Wheat	nucleus	89.54	30.58
TraesCS7D01G445900.2	Wheat	nucleus	88.89	30.43
HORVU6Hr1G027570.6	Barley	cytosol	88.89	30.36
TraesCS6A01G141100.2	Wheat	cytosol	88.89	30.36
TraesCS6B01G169200.2	Wheat	cytosol	88.24	30.13
TraesCS6D01G130400.3	Wheat	cytosol	88.24	30.13
HORVU7Hr1G105370.12	Barley	nucleus	88.24	30.13
VIT_18s0072g00880.t01	Wine grape	nucleus	73.86	29.89
CDY70752	Canola	cytosol	64.71	28.12
GSMUA_Achr6P25490_001	Banana	cytosol	73.2	27.79
Solyc05g047420.2.1	Tomato	nucleus	71.9	24.83
CDX98419	Canola	nucleus	64.05	23.84
CDX67830	Canola	nucleus	63.4	23.6
Bra003416.1-P	Field mustard	nucleus	63.4	23.6
AT3G60500.1	Thale cress	cytosol	65.36	22.83
Bra007540.1-P	Field mustard	nucleus	64.05	22.48
CDY41161	Canola	cytosol	63.4	22.25
KRH77682	Soybean	cytosol	63.4	22.2
CDX71803	Canola	nucleus	63.4	22.05
KRH27808	Soybean	nucleus	63.4	20.64
Zm00001d049855_P002	Maize	nucleus	28.1	19.91
Zm00001d014882_P005	Maize	cytosol	28.76	16.36
Zm00001d014880_P002	Maize	extracellular	28.76	15.33
Zm00001d031643_P001	Maize	cytosol	28.76	12.36
Zm00001d021033_P001	Maize	cytosol	3.27	3.52
Zm00001d049854_P001	Maize	cytosol	1.96	2.19
Zm00001d044450_P001	Maize	cytosol	0.65	0.83

Protein Annotations

EnsemblPlants:Zm00001d045898_P001	EnsemblPlants:Zm00001d045898_T001	EnsemblPlantsGene:Zm00001d045898	Gene3D:3.30.230.70	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2
InterPro:ExoRNase_PH_dom2_sf	InterPro:IPR027408	InterPro:PNPase/RNase_PH_dom_sf	InterPro:Ribosomal_S5_D2-typ_fold	ncoils:Coil	PANTHER:PTHR11097
PANTHER:PTHR11097:SF21	PFAM:PF01138	PFAM:PF03725	ProteinID:AQL03398.1	SEG:seg	SUPFAM:SSF54211
SUPFAM:SSF55666	UniParc:UPI00084571C1	UniProt:A0A1D6NZS0	MapMan:16.8.1.1.5	:	:

Description

Exosome complex component RRP45B

Coordinates

chr9:+:46375397..46376806

Molecular Weight (calculated)

16286.7 Da

IEP (calculated)

5.127

GRAVY (calculated)

0.236

Length

153 amino acids

Sequence
(BLAST)

001: MEFLCVVAGK HVWSVHVDLH ILDDGGNLID AANIAALAAL STFWRPECTV GGDDGQQVTV HDPEVRDPLP LTIHHMPIAV TFAYFGEGNI VVLDPTYKEE
101: AVMGGRMAAI VNSNGDVCAI QKAGGEGLMS SVTMQCLRIA SVKAADITSK IKK

Best Arabidopsis Sequence Match ( AT3G12990.1 )
(BLAST)

001: MEGRLNNMWR LTVNESKFVE SALQSELRVD GRGLYDYRKL TIKFGKEYGS SQVQLGQTHV MAFVTAQLVQ PYKDRPSEGS FSIFTEFSPM ADPSFEPGHP
101: GESAVELGRI IDRALRESRA VDTESLCVLA GKLVWSVRID LHILDNGGNL VDAANVAALA ALMTFRRPDC TVGGDNSQDV IIHPPEEREP LPLIIHHLPI
201: AFTFGFFNKG SILVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRASATT KIIRDAVEAY NRERSSQKVK RHHTLAKSEV
301: LGPIVVV

Arabidopsis Description

RRP45AExosome complex component RRP45A [Source:UniProtKB/Swiss-Prot;Acc:Q9LDM2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.