Factsheet for TraesCS6D01G130400.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60500.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT3G60500.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT3G60500.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G169200.2	Wheat	cytosol	97.99	97.99
TraesCS6A01G141100.2	Wheat	cytosol	97.99	97.99
HORVU6Hr1G027570.6	Barley	cytosol	96.88	96.88
TraesCS7D01G445900.2	Wheat	nucleus	90.85	91.05
Zm00001d045898_P001	Maize	cytosol, extracellular	30.13	88.24
Os02t0550700-01	Rice	cytosol	72.54	82.28
KXG30375	Sorghum	nucleus	79.69	79.51
Zm00001d016770_P002	Maize	nucleus	78.35	78.7
GSMUA_Achr8P16380_001	Banana	cytosol	54.91	67.21
AT3G12990.1	Thale cress	cytosol	44.2	64.5
Zm00001d036997_P001	Maize	cytosol	37.95	63.2
Zm00001d002336_P001	Maize	cytosol	24.55	62.5
CDY70752	Canola	cytosol	48.44	61.65
GSMUA_Achr6P25490_001	Banana	cytosol	54.24	60.3
Zm00001d042612_P001	Maize	plastid	32.37	57.54
Solyc05g047420.2.1	Tomato	nucleus	54.69	55.3
Bra007540.1-P	Field mustard	nucleus	52.9	54.36
AT3G60500.1	Thale cress	cytosol	52.68	53.88
CDX67830	Canola	nucleus	49.33	53.77
Bra003416.1-P	Field mustard	nucleus	49.33	53.77
CDX98419	Canola	nucleus	49.33	53.77
CDY41161	Canola	cytosol	52.23	53.67
CDX71803	Canola	nucleus	51.56	52.5
VIT_18s0072g00880.t01	Wine grape	nucleus	43.75	51.85
KRH77682	Soybean	cytosol	47.54	48.74
Zm00001d033842_P001	Maize	cytosol	33.04	47.13
KRH27808	Soybean	nucleus	48.21	45.96
TraesCS7D01G302500.1	Wheat	cytosol	19.64	30.77
TraesCS4D01G074300.1	Wheat	cytosol	18.08	26.47

Protein Annotations

MapMan:16.8.1.1.5	Gene3D:3.30.230.70	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf	GO:GO:0000178
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	InterPro:IPR027408	PFAM:PF01138	PFAM:PF03725	InterPro:PNPase/RNase_PH_dom_sf
PANTHER:PTHR11097	PANTHER:PTHR11097:SF21	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Rrp45	SUPFAM:SSF54211	SUPFAM:SSF55666
EnsemblPlantsGene:TraesCS6D01G130400	EnsemblPlants:TraesCS6D01G130400.3	TIGR:cd11368	SEG:seg	:	:

Description

No Description!

Coordinates

chr6D:-:96823553..96827358

Molecular Weight (calculated)

49218.3 Da

IEP (calculated)

6.596

GRAVY (calculated)

-0.552

Length

448 amino acids

Sequence
(BLAST)

001: MMDPRWRPTV NEREFIEQAL QSDLRVDGRR PFDFRKLKIA FGREDGSAEV ELGETRVMGY VTAQLVQPYK DRPNEGTLAI FTEFSPMADP AFEPGRPGEA
101: AIELGRVIDR GLRESRAVDM ESLCVVAGKH VWSVRVDLHV LDNEGNLIDA ANIAALAALS TFRRPECTVG GDDGQQVTVH DSEVRDPLPL TIHHLPIAVT
201: FAYFGDGNIM VIDPTYKEEA VMGGRMTATI NSNGDVCAIQ KAGGEGVMSS VIMQCLRIAS VKAADITSKI KREVDDYTTE KALQKVKRTP ALVAKKVNVP
301: DVTMKESTHS ALENQASKAP NDGQQISKGD DDHQNIKRIS PLTVDRTVKH KQTSTFVGGP SNWDPYSKGV SLSSLRISQL PDPPAIPNDD KHEDTKPMLT
401: ESNPEVKSVS NSGTAGESDE FKESRSPKSL IDAIKPKHRR KKKQHGNS

Best Arabidopsis Sequence Match ( AT3G60500.1 )
(BLAST)

001: MEGRLANMWR LTVNESKFVE TALQSELRVD GRGLYDYRKL TIKFGKEYGS SEVQLGQTHV MGFVTAQLVQ PYKDRPNEGS LSIFTEFSPM ADPSFEPGRP
101: GESAVELGRI IDRGLRESRA VDTESLCVLA GKMVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENGQEV IIHPLEEREP LPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIREEVEAY NCERSLQKVK RHPTLAKSEV
301: SGPTVAVKEE HRKSSDQERA AEISREHVER LKLSTEEVRS SKEEEAANFK GGPSNWDPYS EAMDVDSLKV SLASRGDPVT KSSSTKKMNG SGNAQKVGVE
401: ISVEEVTGEL GKKDTKHKDG EMTLKDAVKP KKKRKNKS

Arabidopsis Description

RRP45BExosome complex component RRP45B [Source:UniProtKB/Swiss-Prot;Acc:Q9M209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.