Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d013757_P010 | |
| Zm00001d033159_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60500.1 | Zm00001d013757_P010 | AT4G26630.1 | 25387881 |
| AT3G60500.1 | Zm00001d033159_P001 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045898_P001 | Maize | cytosol, extracellular | 52.42 | 92.16 |
| Zm00001d002336_P001 | Maize | cytosol | 43.12 | 65.91 |
| Zm00001d042612_P001 | Maize | plastid | 52.79 | 56.35 |
| Zm00001d033842_P001 | Maize | cytosol | 55.02 | 47.13 |
| Os02t0550700-01 | Rice | cytosol | 62.45 | 42.53 |
| AT3G12990.1 | Thale cress | cytosol | 47.21 | 41.37 |
| Zm00001d016770_P002 | Maize | nucleus | 68.4 | 41.26 |
| GSMUA_Achr8P16380_001 | Banana | cytosol | 55.76 | 40.98 |
| KXG30375 | Sorghum | nucleus | 68.03 | 40.76 |
| TraesCS7A01G457300.1 | Wheat | cytosol | 60.59 | 40.75 |
| VIT_18s0072g00880.t01 | Wine grape | nucleus | 56.13 | 39.95 |
| HORVU6Hr1G027570.6 | Barley | cytosol | 63.57 | 38.17 |
| TraesCS6A01G141100.2 | Wheat | cytosol | 63.57 | 38.17 |
| TraesCS7B01G358800.3 | Wheat | nucleus | 63.57 | 38.17 |
| TraesCS7D01G445900.2 | Wheat | nucleus | 63.2 | 38.03 |
| TraesCS6B01G169200.2 | Wheat | cytosol | 63.2 | 37.95 |
| TraesCS6D01G130400.3 | Wheat | cytosol | 63.2 | 37.95 |
| HORVU7Hr1G105370.12 | Barley | nucleus | 62.83 | 37.72 |
| CDY70752 | Canola | cytosol | 48.33 | 36.93 |
| GSMUA_Achr6P25490_001 | Banana | cytosol | 53.53 | 35.73 |
| Solyc05g047420.2.1 | Tomato | nucleus | 52.42 | 31.83 |
| CDX98419 | Canola | nucleus | 47.58 | 31.14 |
| CDX67830 | Canola | nucleus | 47.21 | 30.9 |
| Bra003416.1-P | Field mustard | nucleus | 47.21 | 30.9 |
| AT3G60500.1 | Thale cress | cytosol | 49.44 | 30.37 |
| Bra007540.1-P | Field mustard | nucleus | 48.7 | 30.05 |
| CDY41161 | Canola | cytosol | 47.96 | 29.59 |
| CDX71803 | Canola | nucleus | 48.33 | 29.55 |
| KRH77682 | Soybean | cytosol | 47.21 | 29.06 |
| KRH27808 | Soybean | nucleus | 47.96 | 27.45 |
| Zm00001d049855_P002 | Maize | nucleus | 17.84 | 22.22 |
| Zm00001d014882_P005 | Maize | cytosol | 20.45 | 20.45 |
| Zm00001d014880_P002 | Maize | extracellular | 20.07 | 18.82 |
| Zm00001d031643_P001 | Maize | cytosol | 18.22 | 13.76 |
| Zm00001d021033_P001 | Maize | cytosol | 2.6 | 4.93 |
| Zm00001d049854_P001 | Maize | cytosol | 2.23 | 4.38 |
| Zm00001d044450_P001 | Maize | cytosol | 1.12 | 2.48 |
Protein Annotations
| MapMan:16.8.1.1.5 | Gene3D:3.30.230.70 | UniProt:A0A1D6LT60 | ProteinID:AQK82603.1 | InterPro:ExoRNase_PH_dom1 | InterPro:ExoRNase_PH_dom2 |
| InterPro:ExoRNase_PH_dom2_sf | GO:GO:0000178 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR027408 | PFAM:PF01138 |
| PFAM:PF03725 | InterPro:PNPase/RNase_PH_dom_sf | PANTHER:PTHR11097 | PANTHER:PTHR11097:SF21 | InterPro:Ribosomal_S5_D2-typ_fold | InterPro:Rrp45 |
| SUPFAM:SSF54211 | SUPFAM:SSF55666 | UniParc:UPI000844166D | EnsemblPlantsGene:Zm00001d036997 | EnsemblPlants:Zm00001d036997_P001 | EnsemblPlants:Zm00001d036997_T001 |
| SEG:seg | : | : | : | : | : |
Description
Exosome complex component RRP45B
Coordinates
chr6:+:108622832..108624892
Molecular Weight (calculated)
28875.9 Da
IEP (calculated)
4.185
GRAVY (calculated)
-0.206
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MADLSFEPGR PGESTIELGR VIDRGLRESR AVDMEFLCVV AGKHVWSVRV DLHILDNGGN LIDAANIVAL AALSTFWRPE CTVGGDDGQQ VTVHDPEIDV
101: RDLLPLTIHH MPIVVTFAYF GEGNIVVLDP TYKEEAVMGG RMTAIVNSNG DVCAIQKAGG EGPVSSVTMQ CLRIASVKAA VITSKIKKAV SNPLRLMTRR
201: GDGQGASGVI TDVLRNTDDD AVDPHLERIK NQAGDEESDE EDEDFVADKD DSGSPTDDSG DEECTDVLS
101: RDLLPLTIHH MPIVVTFAYF GEGNIVVLDP TYKEEAVMGG RMTAIVNSNG DVCAIQKAGG EGPVSSVTMQ CLRIASVKAA VITSKIKKAV SNPLRLMTRR
201: GDGQGASGVI TDVLRNTDDD AVDPHLERIK NQAGDEESDE EDEDFVADKD DSGSPTDDSG DEECTDVLS
001: MEGRLNNMWR LTVNESKFVE SALQSELRVD GRGLYDYRKL TIKFGKEYGS SQVQLGQTHV MAFVTAQLVQ PYKDRPSEGS FSIFTEFSPM ADPSFEPGHP
101: GESAVELGRI IDRALRESRA VDTESLCVLA GKLVWSVRID LHILDNGGNL VDAANVAALA ALMTFRRPDC TVGGDNSQDV IIHPPEEREP LPLIIHHLPI
201: AFTFGFFNKG SILVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRASATT KIIRDAVGFR NPERFPF
101: GESAVELGRI IDRALRESRA VDTESLCVLA GKLVWSVRID LHILDNGGNL VDAANVAALA ALMTFRRPDC TVGGDNSQDV IIHPPEEREP LPLIIHHLPI
201: AFTFGFFNKG SILVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRASATT KIIRDAVGFR NPERFPF
Arabidopsis Description
RRP45AExosome complex component RRP45A [Source:UniProtKB/Swiss-Prot;Acc:Q9LDM2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.