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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • mitochondrion 1
  • cytosol 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7B01G358800.3 Wheat nucleus 95.75 95.54
HORVU7Hr1G105370.12 Barley nucleus 94.85 94.64
TraesCS6D01G130400.3 Wheat cytosol 91.05 90.85
Zm00001d045898_P001 Maize cytosol, extracellular 30.43 88.89
TraesCS7A01G457300.1 Wheat cytosol 75.84 84.75
Os02t0550700-01 Rice cytosol 72.26 81.77
KXG30375 Sorghum nucleus 77.85 77.51
Zm00001d016770_P002 Maize nucleus 76.73 76.91
GSMUA_Achr8P16380_001 Banana cytosol 55.03 67.21
AT3G12990.1 Thale cress cytosol 44.52 64.82
Zm00001d036997_P001 Maize cytosol 38.03 63.2
Zm00001d002336_P001 Maize cytosol 24.83 63.07
CDY70752 Canola cytosol 47.87 60.8
GSMUA_Achr6P25490_001 Banana cytosol 53.69 59.55
Zm00001d042612_P001 Maize plastid 32.89 58.33
Solyc05g047420.2.1 Tomato nucleus 55.26 55.76
CDX67830 Canola nucleus 50.11 54.5
Bra003416.1-P Field mustard nucleus 50.11 54.5
CDX98419 Canola nucleus 50.11 54.5
Bra007540.1-P Field mustard nucleus 53.02 54.36
AT3G60500.1 Thale cress cytosol 53.24 54.34
CDY41161 Canola cytosol 52.35 53.67
CDX71803 Canola nucleus 51.9 52.73
VIT_18s0072g00880.t01 Wine grape nucleus 43.85 51.85
KRH77682 Soybean cytosol 48.1 49.2
Zm00001d033842_P001 Maize cytosol 33.56 47.77
KRH27808 Soybean nucleus 48.99 46.6
TraesCS7D01G302500.1 Wheat cytosol 19.69 30.77
TraesCS4D01G074300.1 Wheat cytosol 17.67 25.82
Protein Annotations
MapMan:16.8.1.1.5Gene3D:3.30.230.70InterPro:ExoRNase_PH_dom1InterPro:ExoRNase_PH_dom2InterPro:ExoRNase_PH_dom2_sfGO:GO:0000178
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0006139GO:GO:0006396GO:GO:0008150
GO:GO:0008152GO:GO:0009987InterPro:IPR027408PFAM:PF01138PFAM:PF03725InterPro:PNPase/RNase_PH_dom_sf
PANTHER:PTHR11097PANTHER:PTHR11097:SF21InterPro:Ribosomal_S5_D2-typ_foldInterPro:Rrp45SUPFAM:SSF54211SUPFAM:SSF55666
EnsemblPlantsGene:TraesCS7D01G445900EnsemblPlants:TraesCS7D01G445900.2TIGR:cd11368SEG:seg::
Description
No Description!
Coordinates
chr7D:-:566548300..566551991
Molecular Weight (calculated)
48696.7 Da
IEP (calculated)
5.999
GRAVY (calculated)
-0.494
Length
447 amino acids
Sequence
(BLAST)
001: MDQRWRPTVN EREFIEQALQ SDLRVDGRRP FDFRKLTISF GREDGSAEVL LGETCVMGYV TAQLVPPYKD RPNEGTLAIF TEFSPMADPA FEPGRPGEAA
101: IELGRVIDRG LRESRAVDME SLCVVAGKHV WAVRVDLHIL DNGGNLIDAA NIAALAALST FRRPECTVGG DDGQQVTVHD PEVMDPLPLT IHHLPIAVTF
201: AYFGDGNIMV IDPTYKEEAV MGGRMTATIN SNGDVCAIQK AGGEGVMSSV IMQCLRIASV KAADITSKIK TKVDKYTTEK ALQKVKRTPA IVAKEVNVPD
301: VTMKESTHSA MENQTSKAPN DGQQISEGDE NHQNTKMIST LTADRTVKHK QTPTSVGGPS NWDPYSKGVS LSSLRISRLP DPPAVANDEK HEDAEPMLTE
401: SNPEVKSVSN SGSAGESDEV KESRSPESLV DAVKPKHKRK KKQHGKS
Best Arabidopsis Sequence Match ( AT3G60500.1 )
(BLAST)
001: MEGRLANMWR LTVNESKFVE TALQSELRVD GRGLYDYRKL TIKFGKEYGS SEVQLGQTHV MGFVTAQLVQ PYKDRPNEGS LSIFTEFSPM ADPSFEPGRP
101: GESAVELGRI IDRGLRESRA VDTESLCVLA GKMVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENGQEV IIHPLEEREP LPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIREEVEAY NCERSLQKVK RHPTLAKSEV
301: SGPTVAVKEE HRKSSDQERA AEISREHVER LKLSTEEVRS SKEEEAANFK GGPSNWDPYS EAMDVDSLKV SLASRGDPVT KSSSTKKMNG SGNAQKVGVE
401: ISVEEVTGEL GKKDTKHKDG EMTLKDAVKP KKKRKNKS
Arabidopsis Description
RRP45BExosome complex component RRP45B [Source:UniProtKB/Swiss-Prot;Acc:Q9M209]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.