Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS4A01G137900.1 | |
TraesCS4B01G148100.1 | |
TraesCS4D01G153300.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G60500.1 | TraesCS4A01G137900.1 | AT4G26630.1 | 25387881 |
AT3G60500.1 | TraesCS4B01G148100.1 | AT4G26630.1 | 25387881 |
AT3G60500.1 | TraesCS4D01G153300.1 | AT4G26630.1 | 25387881 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS7B01G358800.3 | Wheat | nucleus | 95.75 | 95.54 |
HORVU7Hr1G105370.12 | Barley | nucleus | 94.85 | 94.64 |
TraesCS6D01G130400.3 | Wheat | cytosol | 91.05 | 90.85 |
Zm00001d045898_P001 | Maize | cytosol, extracellular | 30.43 | 88.89 |
TraesCS7A01G457300.1 | Wheat | cytosol | 75.84 | 84.75 |
Os02t0550700-01 | Rice | cytosol | 72.26 | 81.77 |
KXG30375 | Sorghum | nucleus | 77.85 | 77.51 |
Zm00001d016770_P002 | Maize | nucleus | 76.73 | 76.91 |
GSMUA_Achr8P16380_001 | Banana | cytosol | 55.03 | 67.21 |
AT3G12990.1 | Thale cress | cytosol | 44.52 | 64.82 |
Zm00001d036997_P001 | Maize | cytosol | 38.03 | 63.2 |
Zm00001d002336_P001 | Maize | cytosol | 24.83 | 63.07 |
CDY70752 | Canola | cytosol | 47.87 | 60.8 |
GSMUA_Achr6P25490_001 | Banana | cytosol | 53.69 | 59.55 |
Zm00001d042612_P001 | Maize | plastid | 32.89 | 58.33 |
Solyc05g047420.2.1 | Tomato | nucleus | 55.26 | 55.76 |
CDX67830 | Canola | nucleus | 50.11 | 54.5 |
Bra003416.1-P | Field mustard | nucleus | 50.11 | 54.5 |
CDX98419 | Canola | nucleus | 50.11 | 54.5 |
Bra007540.1-P | Field mustard | nucleus | 53.02 | 54.36 |
AT3G60500.1 | Thale cress | cytosol | 53.24 | 54.34 |
CDY41161 | Canola | cytosol | 52.35 | 53.67 |
CDX71803 | Canola | nucleus | 51.9 | 52.73 |
VIT_18s0072g00880.t01 | Wine grape | nucleus | 43.85 | 51.85 |
KRH77682 | Soybean | cytosol | 48.1 | 49.2 |
Zm00001d033842_P001 | Maize | cytosol | 33.56 | 47.77 |
KRH27808 | Soybean | nucleus | 48.99 | 46.6 |
TraesCS7D01G302500.1 | Wheat | cytosol | 19.69 | 30.77 |
TraesCS4D01G074300.1 | Wheat | cytosol | 17.67 | 25.82 |
Protein Annotations
MapMan:16.8.1.1.5 | Gene3D:3.30.230.70 | InterPro:ExoRNase_PH_dom1 | InterPro:ExoRNase_PH_dom2 | InterPro:ExoRNase_PH_dom2_sf | GO:GO:0000178 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR027408 | PFAM:PF01138 | PFAM:PF03725 | InterPro:PNPase/RNase_PH_dom_sf |
PANTHER:PTHR11097 | PANTHER:PTHR11097:SF21 | InterPro:Ribosomal_S5_D2-typ_fold | InterPro:Rrp45 | SUPFAM:SSF54211 | SUPFAM:SSF55666 |
EnsemblPlantsGene:TraesCS7D01G445900 | EnsemblPlants:TraesCS7D01G445900.2 | TIGR:cd11368 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7D:-:566548300..566551991
Molecular Weight (calculated)
48696.7 Da
IEP (calculated)
5.999
GRAVY (calculated)
-0.494
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQRWRPTVN EREFIEQALQ SDLRVDGRRP FDFRKLTISF GREDGSAEVL LGETCVMGYV TAQLVPPYKD RPNEGTLAIF TEFSPMADPA FEPGRPGEAA
101: IELGRVIDRG LRESRAVDME SLCVVAGKHV WAVRVDLHIL DNGGNLIDAA NIAALAALST FRRPECTVGG DDGQQVTVHD PEVMDPLPLT IHHLPIAVTF
201: AYFGDGNIMV IDPTYKEEAV MGGRMTATIN SNGDVCAIQK AGGEGVMSSV IMQCLRIASV KAADITSKIK TKVDKYTTEK ALQKVKRTPA IVAKEVNVPD
301: VTMKESTHSA MENQTSKAPN DGQQISEGDE NHQNTKMIST LTADRTVKHK QTPTSVGGPS NWDPYSKGVS LSSLRISRLP DPPAVANDEK HEDAEPMLTE
401: SNPEVKSVSN SGSAGESDEV KESRSPESLV DAVKPKHKRK KKQHGKS
101: IELGRVIDRG LRESRAVDME SLCVVAGKHV WAVRVDLHIL DNGGNLIDAA NIAALAALST FRRPECTVGG DDGQQVTVHD PEVMDPLPLT IHHLPIAVTF
201: AYFGDGNIMV IDPTYKEEAV MGGRMTATIN SNGDVCAIQK AGGEGVMSSV IMQCLRIASV KAADITSKIK TKVDKYTTEK ALQKVKRTPA IVAKEVNVPD
301: VTMKESTHSA MENQTSKAPN DGQQISEGDE NHQNTKMIST LTADRTVKHK QTPTSVGGPS NWDPYSKGVS LSSLRISRLP DPPAVANDEK HEDAEPMLTE
401: SNPEVKSVSN SGSAGESDEV KESRSPESLV DAVKPKHKRK KKQHGKS
001: MEGRLANMWR LTVNESKFVE TALQSELRVD GRGLYDYRKL TIKFGKEYGS SEVQLGQTHV MGFVTAQLVQ PYKDRPNEGS LSIFTEFSPM ADPSFEPGRP
101: GESAVELGRI IDRGLRESRA VDTESLCVLA GKMVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENGQEV IIHPLEEREP LPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIREEVEAY NCERSLQKVK RHPTLAKSEV
301: SGPTVAVKEE HRKSSDQERA AEISREHVER LKLSTEEVRS SKEEEAANFK GGPSNWDPYS EAMDVDSLKV SLASRGDPVT KSSSTKKMNG SGNAQKVGVE
401: ISVEEVTGEL GKKDTKHKDG EMTLKDAVKP KKKRKNKS
101: GESAVELGRI IDRGLRESRA VDTESLCVLA GKMVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENGQEV IIHPLEEREP LPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIREEVEAY NCERSLQKVK RHPTLAKSEV
301: SGPTVAVKEE HRKSSDQERA AEISREHVER LKLSTEEVRS SKEEEAANFK GGPSNWDPYS EAMDVDSLKV SLASRGDPVT KSSSTKKMNG SGNAQKVGVE
401: ISVEEVTGEL GKKDTKHKDG EMTLKDAVKP KKKRKNKS
Arabidopsis Description
RRP45BExosome complex component RRP45B [Source:UniProtKB/Swiss-Prot;Acc:Q9M209]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.