Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d013757_P010 | |
| Zm00001d033159_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60500.1 | Zm00001d013757_P010 | AT4G26630.1 | 25387881 |
| AT3G60500.1 | Zm00001d033159_P001 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045898_P001 | Maize | cytosol, extracellular | 61.93 | 71.24 |
| Zm00001d036997_P001 | Maize | cytosol | 65.91 | 43.12 |
| Zm00001d042612_P001 | Maize | plastid | 56.82 | 39.68 |
| Zm00001d033842_P001 | Maize | cytosol | 66.48 | 37.26 |
| TraesCS7A01G457300.1 | Wheat | cytosol | 65.34 | 28.75 |
| Os02t0550700-01 | Rice | cytosol | 61.36 | 27.34 |
| Zm00001d016770_P002 | Maize | nucleus | 65.91 | 26.01 |
| KXG30375 | Sorghum | nucleus | 65.34 | 25.61 |
| GSMUA_Achr8P16380_001 | Banana | cytosol | 51.7 | 24.86 |
| TraesCS7D01G445900.2 | Wheat | nucleus | 63.07 | 24.83 |
| TraesCS7B01G358800.3 | Wheat | nucleus | 63.07 | 24.78 |
| HORVU6Hr1G027570.6 | Barley | cytosol | 63.07 | 24.78 |
| HORVU7Hr1G105370.12 | Barley | nucleus | 63.07 | 24.78 |
| TraesCS6D01G130400.3 | Wheat | cytosol | 62.5 | 24.55 |
| TraesCS6A01G141100.2 | Wheat | cytosol | 62.5 | 24.55 |
| TraesCS6B01G169200.2 | Wheat | cytosol | 61.93 | 24.33 |
| AT3G12990.1 | Thale cress | cytosol | 42.05 | 24.1 |
| VIT_18s0072g00880.t01 | Wine grape | nucleus | 51.7 | 24.07 |
| GSMUA_Achr6P25490_001 | Banana | cytosol | 52.84 | 23.08 |
| CDY70752 | Canola | cytosol | 41.48 | 20.74 |
| Solyc05g047420.2.1 | Tomato | nucleus | 51.14 | 20.32 |
| KRH77682 | Soybean | cytosol | 48.3 | 19.45 |
| KRH27808 | Soybean | nucleus | 47.73 | 17.87 |
| CDX98419 | Canola | nucleus | 41.48 | 17.76 |
| CDX67830 | Canola | nucleus | 40.91 | 17.52 |
| Bra003416.1-P | Field mustard | nucleus | 40.91 | 17.52 |
| AT3G60500.1 | Thale cress | cytosol | 43.18 | 17.35 |
| Bra007540.1-P | Field mustard | nucleus | 41.48 | 16.74 |
| CDY41161 | Canola | cytosol | 40.91 | 16.51 |
| CDX71803 | Canola | nucleus | 40.91 | 16.36 |
| Zm00001d049855_P002 | Maize | nucleus | 18.75 | 15.28 |
| Zm00001d014882_P005 | Maize | cytosol | 21.02 | 13.75 |
| Zm00001d014880_P002 | Maize | extracellular | 21.59 | 13.24 |
| Zm00001d031643_P001 | Maize | cytosol | 20.45 | 10.11 |
| Zm00001d021033_P001 | Maize | cytosol | 3.98 | 4.93 |
| Zm00001d049854_P001 | Maize | cytosol | 2.84 | 3.65 |
| Zm00001d044450_P001 | Maize | cytosol | 2.27 | 3.31 |
Protein Annotations
| EnsemblPlants:Zm00001d002336_P001 | EnsemblPlants:Zm00001d002336_T001 | EnsemblPlantsGene:Zm00001d002336 | Gene3D:3.30.230.70 | InterPro:ExoRNase_PH_dom2 | InterPro:ExoRNase_PH_dom2_sf |
| InterPro:IPR027408 | InterPro:PNPase/RNase_PH_dom_sf | PANTHER:PTHR11097 | PANTHER:PTHR11097:SF21 | PFAM:PF03725 | ProteinID:ONM14000.1 |
| SUPFAM:SSF55666 | UniParc:UPI0008443520 | UniProt:A0A1D6DZS0 | MapMan:16.8.1.1.5 | : | : |
Description
Exosome complex component RRP45B
Coordinates
chr2:-:10551022..10553497
Molecular Weight (calculated)
19481.9 Da
IEP (calculated)
8.865
GRAVY (calculated)
-0.081
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRRMETSTA SNMPQGISLM QLISLHWQLL STFWRPECTV GGDDGQQVTV HDPEVRDPLP LTIHHMPIAV TFAYFGEGNI VVLDPTYKEE AVMGGRMTAI
101: VNSNGDVCAI QKAGGEGLMS SVTMQCLRIA PVKVADITSK IKKAVSNPLR LMTRRGAHVL IWFPTKFKSK HAYDVK
101: VNSNGDVCAI QKAGGEGLMS SVTMQCLRIA PVKVADITSK IKKAVSNPLR LMTRRGAHVL IWFPTKFKSK HAYDVK
001: MEGRLNNMWR LTVNESKFVE SALQSELRVD GRGLYDYRKL TIKFGKEYGS SQVQLGQTHV MAFVTAQLVQ PYKDRPSEGS FSIFTEFSPM ADPSFEPGHP
101: GESAVELGRI IDRALRESRA VDTESLCVLA GKLVWSVRID LHILDNGGNL VDAANVAALA ALMTFRRPDC TVGGDNSQDV IIHPPEEREP LPLIIHHLPI
201: AFTFGFFNKG SILVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRASATT KIIRDAVGFR NPERFPF
101: GESAVELGRI IDRALRESRA VDTESLCVLA GKLVWSVRID LHILDNGGNL VDAANVAALA ALMTFRRPDC TVGGDNSQDV IIHPPEEREP LPLIIHHLPI
201: AFTFGFFNKG SILVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRASATT KIIRDAVGFR NPERFPF
Arabidopsis Description
RRP45AExosome complex component RRP45A [Source:UniProtKB/Swiss-Prot;Acc:Q9LDM2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.