Factsheet for HORVU6Hr1G027570.6

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G035250.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60500.1	HORVU4Hr1G035250.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G130400.3	Wheat	cytosol	96.88	96.88
TraesCS6A01G141100.2	Wheat	cytosol	96.43	96.43
TraesCS6B01G169200.2	Wheat	cytosol	96.21	96.21
Zm00001d045898_P001	Maize	cytosol, extracellular	30.36	88.89
HORVU7Hr1G105370.12	Barley	nucleus	88.84	88.84
Os02t0550700-01	Rice	cytosol	72.77	82.53
KXG30375	Sorghum	nucleus	78.79	78.62
Zm00001d016770_P002	Maize	nucleus	77.23	77.58
GSMUA_Achr8P16380_001	Banana	cytosol	54.91	67.21
AT3G12990.1	Thale cress	cytosol	44.2	64.5
Zm00001d036997_P001	Maize	cytosol	38.17	63.57
Zm00001d002336_P001	Maize	cytosol	24.78	63.07
CDY70752	Canola	cytosol	48.44	61.65
GSMUA_Achr6P25490_001	Banana	cytosol	54.02	60.05
Zm00001d042612_P001	Maize	plastid	32.59	57.94
Solyc05g047420.2.1	Tomato	nucleus	55.58	56.21
Bra007540.1-P	Field mustard	nucleus	53.12	54.59
CDX67830	Canola	nucleus	50.0	54.5
Bra003416.1-P	Field mustard	nucleus	50.0	54.5
CDX98419	Canola	nucleus	49.78	54.26
CDY41161	Canola	cytosol	52.46	53.9
AT3G60500.1	Thale cress	cytosol	52.68	53.88
CDX71803	Canola	nucleus	51.79	52.73
VIT_18s0072g00880.t01	Wine grape	nucleus	43.75	51.85
KRH77682	Soybean	cytosol	47.77	48.97
Zm00001d033842_P001	Maize	cytosol	33.48	47.77
KRH27808	Soybean	nucleus	48.44	46.17
HORVU7Hr1G072710.9	Barley	cytosol, plastid	19.42	26.28
HORVU4Hr1G012650.14	Barley	cytosol	17.86	23.74

Protein Annotations

MapMan:16.8.1.1.5	Gene3D:3.30.230.70	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf	GO:GO:0000178
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:HORVU6Hr1G027570	EnsemblPlants:HORVU6Hr1G027570.6	InterPro:IPR027408	UniProt:M0WAX5
PFAM:PF01138	PFAM:PF03725	InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097	PANTHER:PTHR11097:SF21	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Rrp45	SUPFAM:SSF54211	SUPFAM:SSF55666	UniParc:UPI0002956359	SEG:seg	:

Description

No Description!

Coordinates

chrchr6H:-:108856994..108861308

Molecular Weight (calculated)

49259.4 Da

IEP (calculated)

6.687

GRAVY (calculated)

-0.545

Length

448 amino acids

Sequence
(BLAST)

001: MMDPRWRPTV NEREFIEQAL QSDLRVDGRR PFDFRKLKIA FGREDGSAEV ELGETRVMGY VTAQLVQPYK DRPNEGTLAI FTEFSPMADP AFEPGRPGEA
101: AIELGRVIDR GLRESRAVDM ESLCVVAGKH VWSVRVDLHI LDNEGNLIDA ANIAALAALS TFRRPECTVG GDDGQQVTVH DSEVRDPLPL TIHHLPIAVT
201: FAYFGDGNIM VIDPTYKEEA VMGGRMTATI NSNGDVCAIQ KAGGEGVMSS VIMQCLRIAS VKAADITSKI KREVDDYTTE KALQKVKRTP ALVAKKVNVP
301: DITMKESTHS ALENQASKAP NDGQQINKGD DDHQNIKRIS PLNVDRAVKH KQTSTFVGGP SNWDPYSKGV SLSSLRISQL ADPPAIPSDD KQEDTKPMLI
401: ESNPEVKSVS NSRSTGESDE VKESRSPKSL IDAVKPKHRR KKKQHGNS

Best Arabidopsis Sequence Match ( AT3G60500.1 )
(BLAST)

001: MEGRLANMWR LTVNESKFVE TALQSELRVD GRGLYDYRKL TIKFGKEYGS SEVQLGQTHV MGFVTAQLVQ PYKDRPNEGS LSIFTEFSPM ADPSFEPGRP
101: GESAVELGRI IDRGLRESRA VDTESLCVLA GKMVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENGQEV IIHPLEEREP LPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIREEVEAY NCERSLQKVK RHPTLAKSEV
301: SGPTVAVKEE HRKSSDQERA AEISREHVER LKLSTEEVRS SKEEEAANFK GGPSNWDPYS EAMDVDSLKV SLASRGDPVT KSSSTKKMNG SGNAQKVGVE
401: ISVEEVTGEL GKKDTKHKDG EMTLKDAVKP KKKRKNKS

Arabidopsis Description

RRP45BExosome complex component RRP45B [Source:UniProtKB/Swiss-Prot;Acc:Q9M209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.