Factsheet for HORVU4Hr1G012650.14

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plasma membrane
MultiLoc:	cytosol
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G074300.1	Wheat	cytosol	89.02	98.04
TraesCS4B01G075600.1	Wheat	cytosol, nucleus, plastid	89.02	98.04
TraesCS4A01G239300.1	Wheat	cytosol, nucleus, plastid	89.02	98.04
Os11t0311300-03	Rice	cytosol	77.45	85.29
EES15299	Sorghum	cytosol	76.85	84.64
Zm00001d049854_P001	Maize	cytosol	33.23	81.75
Zm00001d021033_P001	Maize	cytosol	34.12	80.99
Zm00001d044450_P001	Maize	cytosol	28.78	80.17
Zm00001d031643_P001	Maize	cytosol	74.48	70.51
Zm00001d049855_P002	Maize	nucleus	44.21	68.98
GSMUA_Achr7P02490_001	Banana	cytosol	57.57	67.13
KRH01295	Soybean	plastid	16.91	63.33
PGSC0003DMT400019417	Potato	cytosol	54.3	60.4
VIT_08s0007g08550.t01	Wine grape	cytosol	54.9	59.49
Bra027816.1-P	Field mustard	cytosol	52.23	58.47
CDY63123	Canola	cytosol	52.23	58.47
AT1G60080.1	Thale cress	cytosol	52.23	58.28
CDY56983	Canola	cytosol	51.93	58.14
Solyc10g080130.1.1	Tomato	cytosol	52.82	57.79
KRH16280	Soybean	nucleus	52.23	57.33
KRH45053	Soybean	cytosol, nucleus	51.34	57.28
Solyc06g075390.2.1	Tomato	nucleus	54.3	56.66
KRH01293	Soybean	cytosol, nucleus	18.4	50.0
PGSC0003DMT400060984	Potato	golgi	48.07	49.24
CDY33620	Canola	cytosol	24.93	42.0
KRH01298	Soybean	cytosol, nucleus, plastid	13.06	39.64
HORVU7Hr1G072710.9	Barley	cytosol, plastid	23.15	23.57
HORVU7Hr1G105370.12	Barley	nucleus	23.74	17.86
HORVU6Hr1G027570.6	Barley	cytosol	23.74	17.86

Protein Annotations

EnsemblPlants:HORVU4Hr1G012650.14	EnsemblPlantsGene:HORVU4Hr1G012650	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf	InterPro:Ribosomal_S5_D2-typ_fold	PANTHER:PTHR11097
PANTHER:PTHR11097:SF20	PFAM:PF01138	PFAM:PF03725	SEG:seg	SUPFAM:SSF54211	SUPFAM:SSF55666
UniParc:UPI000B467B54	UniProt:A0A287N9G2	MapMan:16.8.1.1.4	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:42324676..42328302

Molecular Weight (calculated)

35204.6 Da

IEP (calculated)

4.729

GRAVY (calculated)

0.227

Length

337 amino acids

Sequence
(BLAST)

001: MAAETDATAP GGLAGEMEVE AYRRLFPLAF LERHLRESVR PDARRLAEAR PTTVALGAVS SAHGSALVRL GDTAMLASIK LEVMSPPAET PDQGSVGSCG
101: LALPLAAAAA AGALVLNGLA NFTVVSTAVE FHMPPICSPL VRPGRPAEAA PVISKALEDV LMSSGMLNLK ELCLISGKAS WVAYLDVYCL NADGSLFDAA
201: LISVVAAFTH LEIPLVSVGD DGRVFTVGGN EGKTKYELVN REKRKLTLGD IPFPLTCALH KDSILADPTA EEESIIETSV TVVLDSSGRL ASIQKPGGGV
301: TSMAAIKACI GLAKERGQKL KEILTDSIEA MEVDQAE

Best Arabidopsis Sequence Match ( AT1G60080.1 )
(BLAST)

001: MGIPDAAQDL STEMEVDAFR RIFPLRFFER HLSESLRPDG RQLGKARDTI VNLGLVSTAD GSALAKIGST TMLAAIRMEV MTPSTDSPDE GCIAIEFHMP
101: PICSPTVRPG RPAEAAPVIS KRLSDTILSS GMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLAA VAAFSNLQIP IVALNDNGRI VAVTGEKDQD
201: NALITEKEAV NKEKRKLTLK NIPFSLTCIL HKNYILADPT TEEESIMDTL VTVVLDSSDQ MVSFYKSGGA ALAYSSAIKS CVELARKRAK ELKQILGEMD
301: ID

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.