CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45053	Soybean	cytosol, nucleus	89.25	90.73
KRH01295	Soybean	plastid	25.41	86.67
KRH01293	Soybean	cytosol, nucleus	29.97	74.19
PGSC0003DMT400019417	Potato	cytosol	71.01	71.95
VIT_08s0007g08550.t01	Wine grape	cytosol	72.64	71.7
GSMUA_Achr7P02490_001	Banana	cytosol	66.78	70.93
AT1G60080.1	Thale cress	cytosol	69.38	70.53
Solyc10g080130.1.1	Tomato	cytosol	70.03	69.81
CDY63123	Canola	cytosol	68.08	69.44
Bra027816.1-P	Field mustard	cytosol	67.43	68.77
CDY56983	Canola	cytosol	67.43	68.77
Solyc06g075390.2.1	Tomato	nucleus	71.66	68.11
KRH01298	Soybean	cytosol, nucleus, plastid	22.48	62.16
PGSC0003DMT400060984	Potato	golgi	64.5	60.18
TraesCS4A01G239300.1	Wheat	cytosol, nucleus, plastid	57.33	57.52
TraesCS4D01G074300.1	Wheat	cytosol	57.0	57.19
TraesCS4B01G075600.1	Wheat	cytosol, nucleus, plastid	57.0	57.19
Os11t0311300-03	Rice	cytosol	56.35	56.54
Zm00001d021033_P001	Maize	cytosol	25.41	54.93
EES15299	Sorghum	cytosol	54.72	54.9
Zm00001d049854_P001	Maize	cytosol	23.78	53.28
HORVU4Hr1G012650.14	Barley	cytosol	57.33	52.23
Zm00001d044450_P001	Maize	cytosol	20.2	51.24
Zm00001d049855_P002	Maize	nucleus	34.2	48.61
CDY33620	Canola	cytosol	30.29	46.5
Zm00001d031643_P001	Maize	cytosol	53.42	46.07
KRH70124	Soybean	endoplasmic reticulum, nucleus	26.38	28.32
KRH08468	Soybean	cytosol	26.38	28.32
KRH14064	Soybean	cytosol, nucleus, plastid	18.24	22.58
KRH44119	Soybean	plasma membrane	14.33	19.47
KRH77682	Soybean	cytosol	23.78	16.7
KRH27808	Soybean	nucleus	23.78	15.53

Protein Annotations

EntrezGene:100812232	MapMan:16.8.1.1.4	Gene3D:3.30.230.70	EMBL:ACUP02008858	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2
InterPro:ExoRNase_PH_dom2_sf	EnsemblPlantsGene:GLYMA_14G145600	GO:GO:0000176	GO:GO:0000177	GO:GO:0000467	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0017091	GO:GO:0034427	GO:GO:0034473	GO:GO:0034475	GO:GO:0034476
GO:GO:0043928	GO:GO:0071028	GO:GO:0071035	GO:GO:0071038	GO:GO:0071042	UniProt:I1MA04
InterPro:IPR027408	EnsemblPlants:KRH16280	ProteinID:KRH16280	ProteinID:KRH16280.1	PFAM:PF01138	PFAM:PF03725
InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097	PANTHER:PTHR11097:SF20	InterPro:Ribosomal_S5_D2-typ_fold	SUPFAM:SSF54211	SUPFAM:SSF55666
UniParc:UPI00023D364F	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:+:30548555..30559140

Molecular Weight (calculated)

33063.1 Da

IEP (calculated)

4.933

GRAVY (calculated)

0.080

Length

307 amino acids

Sequence
(BLAST)

001: MGLSNASEDL SSEMEVDAFR RLFPLRYFER HLAESIRPDG RPLGKARETS IFLGAVASAN GSALVKIGST TMLTAIKMEV MTPSLESPDE GCLAIDFHMP
101: PICSPIVRPG RPAEASPVVS KQLSDTISSS RMIDLKELSL VGGKAAWMAY LNAAFSIMQD IYCLDADGAL FDAALISAVA ALSHLQIPAV AMNDDGKIVL
201: VSGEDGQKPV NKEKRKLTLR SIPFSLTCIL HKNYILADPT AEEESIMETH VTIVLDTSGQ LISLYKPGGP ALAYTSAIQD CVGLTGQRVK ELKSYLDKEN
301: SAMEVVV

Best Arabidopsis Sequence Match ( AT1G60080.1 )
(BLAST)

001: MGIPDAAQDL STEMEVDAFR RIFPLRFFER HLSESLRPDG RQLGKARDTI VNLGLVSTAD GSALAKIGST TMLAAIRMEV MTPSTDSPDE GCIAIEFHMP
101: PICSPTVRPG RPAEAAPVIS KRLSDTILSS GMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLAA VAAFSNLQIP IVALNDNGRI VAVTGEKDQD
201: NALITEKEAV NKEKRKLTLK NIPFSLTCIL HKNYILADPT TEEESIMDTL VTVVLDSSDQ MVSFYKSGGA ALAYSSAIKS CVELARKRAK ELKQILGEMD
301: ID

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.