CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08468	Soybean	cytosol	97.9	97.9
VIT_04s0008g06260.t01	Wine grape	cytosol	82.87	82.58
EER90439	Sorghum	cytosol	79.37	79.37
PGSC0003DMT400032572	Potato	cytosol	79.37	78.82
AT3G07750.2	Thale cress	cytosol	78.32	78.32
KRH14064	Soybean	cytosol, nucleus, plastid	67.83	78.23
Os12t0403800-02	Rice	cytosol	76.92	77.46
Zm00001d014880_P002	Maize	extracellular	77.62	77.35
CDY22130	Canola	cytosol	77.62	77.08
OQU78915	Sorghum	cytoskeleton, cytosol, nucleus	77.27	77.0
Bra040025.1-P	Field mustard	cytosol	76.92	76.39
TraesCS7B01G206000.1	Wheat	cytosol	76.22	76.22
TraesCS7A01G305800.1	Wheat	cytosol	76.22	76.22
TraesCS7D01G302500.1	Wheat	cytosol	75.52	75.52
GSMUA_Achr4P23580_001	Banana	cytosol	79.72	75.5
Zm00001d014882_P005	Maize	cytosol	69.93	74.35
CDY35960	Canola	cytosol	74.48	72.7
Bra029674.1-P	Field mustard	cytosol	74.13	72.35
Solyc08g007520.2.1	Tomato	nucleus	80.07	69.39
CDY28020	Canola	cytoskeleton, cytosol, nucleus	73.43	66.67
HORVU7Hr1G072710.9	Barley	cytosol, plastid	76.57	66.16
KRH44119	Soybean	plasma membrane	29.37	37.17
KRH01295	Soybean	plastid	9.44	30.0
KRH16280	Soybean	nucleus	28.32	26.38
KRH45053	Soybean	cytosol, nucleus	27.27	25.83
KRH01293	Soybean	cytosol, nucleus	11.19	25.81
KRH77682	Soybean	cytosol	26.92	17.62
KRH27808	Soybean	nucleus	26.57	16.17
KRH01298	Soybean	cytosol, nucleus, plastid	5.94	15.32

Protein Annotations

EntrezGene:100806953	MapMan:16.8.1.1.3	Gene3D:3.30.230.70	EMBL:ACUP02000748	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2
InterPro:ExoRNase_PH_dom2_sf	EnsemblPlantsGene:GLYMA_02G070100	GO:GO:0000176	GO:GO:0000177	GO:GO:0000467	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0017091	GO:GO:0034427	GO:GO:0034473	GO:GO:0034475	GO:GO:0034476
GO:GO:0043928	GO:GO:0071028	GO:GO:0071035	GO:GO:0071038	GO:GO:0071042	UniProt:I1JD36
InterPro:IPR027408	ProteinID:KRH70123.1	EnsemblPlants:KRH70124	ProteinID:KRH70124	ProteinID:KRH70124.1	PFAM:PF01138
PFAM:PF03725	InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097	PANTHER:PTHR11097:SF8	InterPro:Ribosomal_S5_D2-typ_fold	SUPFAM:SSF54211
SUPFAM:SSF55666	UniParc:UPI0002337106	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:6166963..6170756

Molecular Weight (calculated)

30044.6 Da

IEP (calculated)

4.412

GRAVY (calculated)

-0.031

Length

286 amino acids

Sequence
(BLAST)

001: MVGLSLGETH FIQGGIAQDL RCDGRKRLTY RPISVETGVI PQTNGSARVR MGATDVIASV KAELGKPSLL QPDKGKVSIY IDCSSTAEPA FEGRGGDELA
101: AELSNALQHC LLGGKSGEGA GIDLSSLIVV EGKICWDLYI DGLVVSSDGN LLDALGAAIK AALSNTGIPR VEVAAGTSND EHPEVDVSDE EFLQFDTSRV
201: PVIVTLTKVG RHYIVDATSE EESQMSSGVS ISVNRQGHIC GITKRGGVGL DPSIILDMIS VAKHVSEQLI NKLDSEIASA EADEES

Best Arabidopsis Sequence Match ( AT3G07750.2 )
(BLAST)

001: MGLSLGEQHF IKGGIAQDLR TDGRKRLTYR PIYVETGVIP QANGSARVRI GGTDVIASVK AEIGRPSSLQ PDKGKVAVFI DCSPTAEPTF GGRGGEELSS
101: ELALALQRCL LGGKSGAGAG INLSSLLIKE GKVCWDLYID GLVISSDGNL LDALGAAIKA ALTNTAIPKV NVSAEVADDE QPEIDISDEE YLQFDTSSVP
201: VIVTLTKVGT HYIVDATAEE ESQMSSAVSI SVNRTGHICG LTKRSGSGLD PSVILDMISV AKHVTETLMS KLDSEISAAE ACEDES

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9FPI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.