Factsheet for GSMUA_Achr4P23580_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0403800-02	Rice	cytosol	76.82	81.69
VIT_04s0008g06260.t01	Wine grape	cytosol	77.48	81.53
EER90439	Sorghum	cytosol	77.15	81.47
Zm00001d014880_P002	Maize	extracellular	76.82	80.84
KRH08468	Soybean	cytosol	75.83	80.07
OQU78915	Sorghum	cytoskeleton, cytosol, nucleus	75.83	79.79
KRH70124	Soybean	endoplasmic reticulum, nucleus	75.5	79.72
TraesCS7B01G206000.1	Wheat	cytosol	74.5	78.67
TraesCS7A01G305800.1	Wheat	cytosol	74.5	78.67
TraesCS7D01G302500.1	Wheat	cytosol	73.84	77.97
AT3G07750.2	Thale cress	cytosol	73.51	77.62
Zm00001d014882_P005	Maize	cytosol	68.87	77.32
PGSC0003DMT400032572	Potato	cytosol	73.51	77.08
Bra040025.1-P	Field mustard	cytosol	72.19	75.69
CDY22130	Canola	cytosol	72.19	75.69
Bra029674.1-P	Field mustard	cytosol	69.87	72.01
CDY35960	Canola	cytosol	69.87	72.01
HORVU7Hr1G072710.9	Barley	cytosol, plastid	74.83	68.28
Solyc08g007520.2.1	Tomato	nucleus	73.84	67.58
CDY28020	Canola	cytoskeleton, cytosol, nucleus	68.87	66.03
KRH14064	Soybean	cytosol, nucleus, plastid	53.31	64.92
GSMUA_Achr7P02490_001	Banana	cytosol	24.83	25.95
GSMUA_Achr8P16380_001	Banana	cytosol	29.14	24.04
GSMUA_Achr6P25490_001	Banana	cytosol	28.15	21.09

Protein Annotations

EnsemblPlants:GSMUA_Achr4P23580_001	EnsemblPlants:GSMUA_Achr4T23580_001	EnsemblPlantsGene:GSMUA_Achr4G23580_001	Gene3D:3.30.230.70	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2
InterPro:ExoRNase_PH_dom2_sf	InterPro:IPR027408	InterPro:PNPase/RNase_PH_dom_sf	InterPro:Ribosomal_S5_D2-typ_fold	ncoils:Coil	PANTHER:PTHR11097
PANTHER:PTHR11097:SF8	PFAM:PF01138	PFAM:PF03725	SEG:seg	SUPFAM:SSF54211	SUPFAM:SSF55666
UniParc:UPI0002955ED0	UniProt:M0SRG9	MapMan:16.8.1.1.3	:	:	:

Description

Putative Exosome complex exonuclease RRP42 [Source:GMGC_GENE;Acc:GSMUA_Achr4G23580_001]

Coordinates

chr4:+:23627113..23630927

Molecular Weight (calculated)

31943.1 Da

IEP (calculated)

5.194

GRAVY (calculated)

-0.021

Length

302 amino acids

Sequence
(BLAST)

001: MVGLSEGEKR FIRGGIAQDL RTDGRQRLHY RPISVETGVI PQANGSARVR LGATDVIVSI KAELGKPHPL QPDKGKVAIF IDCSPTAAPM FEGRGGEELS
101: TELSFALQRC LLGGRSGAGA GIDLSSLVIV EGKVCWDLYI DGLVVSSDGN LLDALAAAIK VALSNTGIPK VTVNLGASPN DQPDVDVSDE EFLQFDTSGV
201: PVVVTLTKVS RHYIVDATSE EESQMSSAVS ISVNRHGHIC GLTKRGGAGL DPSVILDMIS VAKHVGEQLM SLLDSEIAAA EASAEDHKKN RFDNSHMLFA
301: SK

Best Arabidopsis Sequence Match ( AT3G07750.2 )
(BLAST)

001: MGLSLGEQHF IKGGIAQDLR TDGRKRLTYR PIYVETGVIP QANGSARVRI GGTDVIASVK AEIGRPSSLQ PDKGKVAVFI DCSPTAEPTF GGRGGEELSS
101: ELALALQRCL LGGKSGAGAG INLSSLLIKE GKVCWDLYID GLVISSDGNL LDALGAAIKA ALTNTAIPKV NVSAEVADDE QPEIDISDEE YLQFDTSSVP
201: VIVTLTKVGT HYIVDATAEE ESQMSSAVSI SVNRTGHICG LTKRSGSGLD PSVILDMISV AKHVTETLMS KLDSEISAAE ACEDES

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9FPI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.