CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90439	Sorghum	cytosol	93.73	94.06
Os12t0403800-02	Rice	cytosol	88.15	89.08
TraesCS7B01G206000.1	Wheat	cytosol	85.71	86.01
TraesCS7D01G302500.1	Wheat	cytosol	85.37	85.66
TraesCS7A01G305800.1	Wheat	cytosol	85.37	85.66
VIT_04s0008g06260.t01	Wine grape	cytosol	79.09	79.09
KRH08468	Soybean	cytosol	78.4	78.67
KRH70124	Soybean	endoplasmic reticulum, nucleus	77.0	77.27
GSMUA_Achr4P23580_001	Banana	cytosol	79.79	75.83
HORVU7Hr1G072710.9	Barley	cytosol, plastid	86.41	74.92
AT3G07750.2	Thale cress	cytosol	74.22	74.48
PGSC0003DMT400032572	Potato	cytosol	73.87	73.61
CDY22130	Canola	cytosol	71.78	71.53
Bra040025.1-P	Field mustard	cytosol	71.78	71.53
CDY35960	Canola	cytosol	70.03	68.6
Bra029674.1-P	Field mustard	cytosol	70.03	68.6
Solyc08g007520.2.1	Tomato	nucleus	74.22	64.55
CDY28020	Canola	cytoskeleton, cytosol, nucleus	68.29	62.22
KRH14064	Soybean	cytosol, nucleus, plastid	53.66	62.1
EES15299	Sorghum	cytosol	27.18	25.49
KXG30375	Sorghum	nucleus	30.66	19.6

Protein Annotations

EnsemblPlants:OQU78915	EnsemblPlantsGene:SORBI_3008G071050	Gene3D:3.30.230.70	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf
InterPro:IPR027408	InterPro:PNPase/RNase_PH_dom_sf	InterPro:Ribosomal_S5_D2-typ_fold	PANTHER:PTHR11097	PANTHER:PTHR11097:SF8	PFAM:PF01138
PFAM:PF03725	ProteinID:OQU78915	ProteinID:OQU78915.1	SEG:seg	SUPFAM:SSF54211	SUPFAM:SSF55666
UniParc:UPI000B4239AA	UniProt:A0A1Z5R634	MapMan:16.8.1.1.3	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:9315987..9334268

Molecular Weight (calculated)

30140.9 Da

IEP (calculated)

4.506

GRAVY (calculated)

0.102

Length

287 amino acids

Sequence
(BLAST)

001: MMMGLSEGEK HFIHGGIAQD IRTDGRRRLQ FRALSVQTGV IPQANGSARV RLGVTEIIAS VKAELGKPSI LHPDKGKVSI FVDCSPTAEP MFEGRGSEEL
101: SAELSAALQR CLLGGKSGAG AAIDLSSLIV VEGKVCWDLY IDGLVVSSDG NLLDALAAAI KVALSDTGIP KVNVSVSAAS EEEPEVNVSD EEFLQFDTSG
201: VPVIITLTKV GRHYIVDATS EEESQTSSAV SVSVNRHGQI CGLSKRGGAG LDPSVILDML SVAKHVSQQF ISLLDSEIAA AEAEVEE

Best Arabidopsis Sequence Match ( AT3G07750.2 )
(BLAST)

001: MGLSLGEQHF IKGGIAQDLR TDGRKRLTYR PIYVETGVIP QANGSARVRI GGTDVIASVK AEIGRPSSLQ PDKGKVAVFI DCSPTAEPTF GGRGGEELSS
101: ELALALQRCL LGGKSGAGAG INLSSLLIKE GKVCWDLYID GLVISSDGNL LDALGAAIKA ALTNTAIPKV NVSAEVADDE QPEIDISDEE YLQFDTSSVP
201: VIVTLTKVGT HYIVDATAEE ESQMSSAVSI SVNRTGHICG LTKRSGSGLD PSVILDMISV AKHVTETLMS KLDSEISAAE ACEDES

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9FPI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.