Factsheet for Solyc08g007520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2
plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032572	Potato	cytosol	86.36	98.96
KRH08468	Soybean	cytosol	71.21	82.17
VIT_04s0008g06260.t01	Wine grape	cytosol	69.7	80.14
KRH70124	Soybean	endoplasmic reticulum, nucleus	69.39	80.07
AT3G07750.2	Thale cress	cytosol	66.97	77.27
EER90439	Sorghum	cytosol	66.06	76.22
CDY22130	Canola	cytosol	66.06	75.69
Zm00001d014880_P002	Maize	extracellular	65.76	75.61
Bra040025.1-P	Field mustard	cytosol	65.45	75.0
Os12t0403800-02	Rice	cytosol	64.55	75.0
OQU78915	Sorghum	cytoskeleton, cytosol, nucleus	64.55	74.22
GSMUA_Achr4P23580_001	Banana	cytosol	67.58	73.84
Bra029674.1-P	Field mustard	cytosol	64.85	73.04
CDY35960	Canola	cytosol	64.85	73.04
Zm00001d014882_P005	Maize	cytosol	59.39	72.86
TraesCS7A01G305800.1	Wheat	cytosol	62.73	72.38
TraesCS7B01G206000.1	Wheat	cytosol	62.73	72.38
TraesCS7D01G302500.1	Wheat	cytosol	62.12	71.68
CDY28020	Canola	cytoskeleton, cytosol, nucleus	62.73	65.71
KRH14064	Soybean	cytosol, nucleus, plastid	47.58	63.31
HORVU7Hr1G072710.9	Barley	cytosol, plastid	63.33	63.14
Solyc10g080130.1.1	Tomato	cytosol	22.73	24.35
Solyc06g075390.2.1	Tomato	nucleus	23.64	24.15
Solyc05g047420.2.1	Tomato	nucleus	25.15	18.74

Protein Annotations

MapMan:16.8.1.1.3	Gene3D:3.30.230.70	ncoils:Coil	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf
GO:GO:0000176	GO:GO:0000177	GO:GO:0000467	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0017091
GO:GO:0034427	GO:GO:0034473	GO:GO:0034475	GO:GO:0034476	GO:GO:0043928	GO:GO:0071028
GO:GO:0071035	GO:GO:0071038	GO:GO:0071042	InterPro:IPR027408	UniProt:K4CIN9	PFAM:PF01138
PFAM:PF03725	InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097	PANTHER:PTHR11097:SF8	InterPro:Ribosomal_S5_D2-typ_fold	SUPFAM:SSF54211
SUPFAM:SSF55666	EnsemblPlantsGene:Solyc08g007520.2	EnsemblPlants:Solyc08g007520.2.1	UniParc:UPI000276C63D	SEG:seg	:

Description

No Description!

Coordinates

chr8:-:2066461..2069311

Molecular Weight (calculated)

35527.3 Da

IEP (calculated)

4.582

GRAVY (calculated)

0.003

Length

330 amino acids

Sequence
(BLAST)

001: MIIYGFIIYN DKYYETVRVF CFYTSVLLLN ILHSPSSNFF LEMVGLSVGE RNFIKGGIAQ DLRNDGRKRL TYRPIYVETG VIPQANGSAK VKLGATDVIA
101: SVKAELGKPS LSHPDQGKVF IYVECSPTAE PSFEGRGGEE LSTELSTALE RSLLGGKSGA GAGIDPASLL IKEGKVCWDL YVDCLVISSD GNLLDALGAA
201: IKAALSNTGI PRVQFREAAS TDEHADVDVS DEEFLQFDTS GVPVIVTLTK VGRHYIVDAT SEEESLMSSA VSISVNRRGL ICGLTKRGGA GLDPSVILDM
301: ISVAKHVSEQ LINKLDSEIE AAERANEEEP

Best Arabidopsis Sequence Match ( AT3G07750.2 )
(BLAST)

001: MGLSLGEQHF IKGGIAQDLR TDGRKRLTYR PIYVETGVIP QANGSARVRI GGTDVIASVK AEIGRPSSLQ PDKGKVAVFI DCSPTAEPTF GGRGGEELSS
101: ELALALQRCL LGGKSGAGAG INLSSLLIKE GKVCWDLYID GLVISSDGNL LDALGAAIKA ALTNTAIPKV NVSAEVADDE QPEIDISDEE YLQFDTSSVP
201: VIVTLTKVGT HYIVDATAEE ESQMSSAVSI SVNRTGHICG LTKRSGSGLD PSVILDMISV AKHVTETLMS KLDSEISAAE ACEDES

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9FPI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.