Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400019417 | Potato | cytosol | 92.57 | 98.68 |
| Solyc10g080130.1.1 | Tomato | cytosol | 84.21 | 88.31 |
| VIT_08s0007g08550.t01 | Wine grape | cytosol | 75.23 | 78.14 |
| KRH01295 | Soybean | plastid | 21.05 | 75.56 |
| KRH45053 | Soybean | cytosol, nucleus | 69.66 | 74.5 |
| GSMUA_Achr7P02490_001 | Banana | cytosol | 64.4 | 71.97 |
| KRH16280 | Soybean | nucleus | 68.11 | 71.66 |
| AT1G60080.1 | Thale cress | cytosol | 65.02 | 69.54 |
| Bra027816.1-P | Field mustard | cytosol | 62.54 | 67.11 |
| CDY56983 | Canola | cytosol | 62.23 | 66.78 |
| CDY63123 | Canola | cytosol | 62.23 | 66.78 |
| KRH01293 | Soybean | cytosol, nucleus | 24.46 | 63.71 |
| Os11t0311300-03 | Rice | cytosol | 56.66 | 59.8 |
| TraesCS4B01G075600.1 | Wheat | cytosol, nucleus, plastid | 56.66 | 59.8 |
| TraesCS4A01G239300.1 | Wheat | cytosol, nucleus, plastid | 56.66 | 59.8 |
| TraesCS4D01G074300.1 | Wheat | cytosol | 56.35 | 59.48 |
| EES15299 | Sorghum | cytosol | 55.11 | 58.17 |
| Zm00001d021033_P001 | Maize | cytosol | 24.77 | 56.34 |
| Zm00001d044450_P001 | Maize | cytosol | 21.05 | 56.2 |
| Zm00001d049854_P001 | Maize | cytosol | 23.22 | 54.74 |
| HORVU4Hr1G012650.14 | Barley | cytosol | 56.66 | 54.3 |
| Zm00001d049855_P002 | Maize | nucleus | 33.75 | 50.46 |
| Zm00001d031643_P001 | Maize | cytosol | 54.8 | 49.72 |
| KRH01298 | Soybean | cytosol, nucleus, plastid | 16.1 | 46.85 |
| CDY33620 | Canola | cytosol | 27.86 | 45.0 |
| Solyc08g007520.2.1 | Tomato | nucleus | 24.15 | 23.64 |
| Solyc05g047420.2.1 | Tomato | nucleus | 20.43 | 14.9 |
Protein Annotations
| MapMan:16.8.1.1.4 | Gene3D:3.30.230.70 | ncoils:Coil | InterPro:ExoRNase_PH_dom1 | InterPro:ExoRNase_PH_dom2 | InterPro:ExoRNase_PH_dom2_sf |
| GO:GO:0000176 | GO:GO:0000177 | GO:GO:0000467 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0017091 |
| GO:GO:0034427 | GO:GO:0034473 | GO:GO:0034475 | GO:GO:0034476 | GO:GO:0043928 | GO:GO:0071028 |
| GO:GO:0071035 | GO:GO:0071038 | GO:GO:0071042 | InterPro:IPR027408 | UniProt:K4C9Q4 | PFAM:PF01138 |
| PFAM:PF03725 | InterPro:PNPase/RNase_PH_dom_sf | PANTHER:PTHR11097 | PANTHER:PTHR11097:SF20 | InterPro:Ribosomal_S5_D2-typ_fold | SUPFAM:SSF54211 |
| SUPFAM:SSF55666 | EnsemblPlantsGene:Solyc06g075390.2 | EnsemblPlants:Solyc06g075390.2.1 | UniParc:UPI0002766B6F | : | : |
Description
No Description!
Coordinates
chr6:-:46792068..46799399
Molecular Weight (calculated)
34976.2 Da
IEP (calculated)
6.048
GRAVY (calculated)
-0.047
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAANGSSDL YSEMEVDAFR RLFPLRYHEQ HLLKSVRPDA RKLGSARDTT LALGAVASAE GSALAKIGST TMLAAIKMEI MTPTVECPDE GSIAIEFHMP
101: PICSPLVRPG RPAEAASVIS KQLSDTILSS GMIDLKELCL VGGKAAWMAY LDIYCLDADG SLFDAALLSA VAAFSHLNIP VVSLNEDGRI VLVSEDNNQL
201: KLEKQPVNTE KRKLKLNSPP FSLTCLLHKN YILADPTAEE ESIMETAVTV VLDSSYQLVS LYKPGGPVHA HTSVIQDCVA LAKRRVKELQ SVLNEAISDM
301: EVDHPKKKKS NSCEAKAGQF TNH
101: PICSPLVRPG RPAEAASVIS KQLSDTILSS GMIDLKELCL VGGKAAWMAY LDIYCLDADG SLFDAALLSA VAAFSHLNIP VVSLNEDGRI VLVSEDNNQL
201: KLEKQPVNTE KRKLKLNSPP FSLTCLLHKN YILADPTAEE ESIMETAVTV VLDSSYQLVS LYKPGGPVHA HTSVIQDCVA LAKRRVKELQ SVLNEAISDM
301: EVDHPKKKKS NSCEAKAGQF TNH
001: MGIPDAAQDL STEMEVDAFR RIFPLRFFER HLSESLRPDG RQLGKARDTI VNLGLVSTAD GSALAKIGST TMLAAIRMEV MTPSTDSPDE GCIAIEFHMP
101: PICSPTVRPG RPAEAAPVIS KRLSDTILSS GMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLAA VAAFSNLQIP IVALNDNGRI VAVTGEKDQD
201: NALITEKEAV NKEKRKLTLK NIPFSLTCIL HKNYILADPT TEEESIMDTL VTVVLDSSDQ MVSFYKSGGA ALAYSSAIKS CVELARKRAK ELKQILGEMD
301: ID
101: PICSPTVRPG RPAEAAPVIS KRLSDTILSS GMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLAA VAAFSNLQIP IVALNDNGRI VAVTGEKDQD
201: NALITEKEAV NKEKRKLTLK NIPFSLTCIL HKNYILADPT TEEESIMDTL VTVVLDSSDQ MVSFYKSGGA ALAYSSAIKS CVELARKRAK ELKQILGEMD
301: ID
Arabidopsis Description
3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUI4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.