Factsheet for Solyc05g047420.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g065490.2.1
Solyc10g006000.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60500.1	Solyc07g065490.2.1	AT4G26630.1	25387881
AT3G60500.1	Solyc10g006000.2.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045898_P001	Maize	cytosol, extracellular	24.83	71.9
AT3G12990.1	Thale cress	cytosol	47.4	68.4
GSMUA_Achr8P16380_001	Banana	cytosol	55.53	67.21
CDY70752	Canola	cytosol	49.66	62.5
VIT_18s0072g00880.t01	Wine grape	nucleus	52.6	61.64
GSMUA_Achr6P25490_001	Banana	cytosol	53.95	59.31
Os02t0550700-01	Rice	cytosol	51.92	58.23
TraesCS7A01G457300.1	Wheat	cytosol	52.37	58.0
AT3G60500.1	Thale cress	cytosol	57.34	57.99
Bra007540.1-P	Field mustard	nucleus	56.21	57.11
CDY41161	Canola	cytosol	55.76	56.65
CDX71803	Canola	nucleus	55.76	56.14
HORVU6Hr1G027570.6	Barley	cytosol	56.21	55.58
HORVU7Hr1G105370.12	Barley	nucleus	56.21	55.58
TraesCS7B01G358800.3	Wheat	nucleus	56.21	55.58
TraesCS7D01G445900.2	Wheat	nucleus	55.76	55.26
CDX98419	Canola	nucleus	51.02	54.99
Bra003416.1-P	Field mustard	nucleus	51.02	54.99
CDX67830	Canola	nucleus	51.02	54.99
TraesCS6A01G141100.2	Wheat	cytosol	55.53	54.91
KXG30375	Sorghum	nucleus	55.53	54.79
Zm00001d016770_P002	Maize	nucleus	55.08	54.71
TraesCS6B01G169200.2	Wheat	cytosol	55.3	54.69
TraesCS6D01G130400.3	Wheat	cytosol	55.3	54.69
KRH77682	Soybean	cytosol	52.82	53.55
Zm00001d036997_P001	Maize	cytosol	31.83	52.42
Zm00001d002336_P001	Maize	cytosol	20.32	51.14
KRH27808	Soybean	nucleus	53.95	50.85
Zm00001d042612_P001	Maize	plastid	27.09	47.62
Zm00001d033842_P001	Maize	cytosol	28.44	40.13
Solyc08g007520.2.1	Tomato	nucleus	18.74	25.15
Solyc10g080130.1.1	Tomato	cytosol	15.58	22.4
Solyc06g075390.2.1	Tomato	nucleus	14.9	20.43

Protein Annotations

MapMan:16.8.1.1.5	Gene3D:3.30.230.70	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf	GO:GO:0000176
GO:GO:0000177	GO:GO:0000178	GO:GO:0000467	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0017091	GO:GO:0034427	GO:GO:0034473	GO:GO:0034475	GO:GO:0034476	GO:GO:0043928
GO:GO:0071028	GO:GO:0071035	GO:GO:0071038	GO:GO:0071042	InterPro:IPR027408	UniProt:K4C0X6
PFAM:PF01138	PFAM:PF03725	InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097	PANTHER:PTHR11097:SF21	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Rrp45	SUPFAM:SSF54211	SUPFAM:SSF55666	EnsemblPlantsGene:Solyc05g047420.2	EnsemblPlants:Solyc05g047420.2.1	UniParc:UPI0002766AD4
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:58866005..58877116

Molecular Weight (calculated)

48663.8 Da

IEP (calculated)

6.368

GRAVY (calculated)

-0.496

Length

443 amino acids

Sequence
(BLAST)

001: MEQRLGSTWR MTVNEKKFIE SALESELRVD GRRPFDYRAL TIKFGREDGS SEVQLGQTHI MSFVTSQLVQ PYRDRPNEGT LSVFTEFSPM ADPSFEAGRP
101: SESAVELGRI IDRGLRESRA VDTESLCVVA GKWVWSIRID LHILDNGGNL VDAANIAALA ALLTFRRPEC TLGGDDGQEV TLHPPEVREP LPLIVHHLPV
201: AVTFAFIGDE HMVIDPTHHE EAVMGGRMSV TLNADGDVCA IQKAGGHGVL QSVVMQCLRI ASVKAGDITS KIKTVVESYK TERALRMVKR HAPRNAVDVN
301: APGEKAKQVL EGPKLKSEEC SVSQSDDMDV EQGRIKKKSD KDRSFTGRPS SWDPYSEGVN TDELKATLAS RGSVAVPMNL DNLGDNIRDE TKTDEPLPDV
401: NQVSSSTDSA GKEMTMSKEK TLQDAVKPKN KRKKKKSSNT AAV

Best Arabidopsis Sequence Match ( AT3G60500.1 )
(BLAST)

001: MEGRLANMWR LTVNESKFVE TALQSELRVD GRGLYDYRKL TIKFGKEYGS SEVQLGQTHV MGFVTAQLVQ PYKDRPNEGS LSIFTEFSPM ADPSFEPGRP
101: GESAVELGRI IDRGLRESRA VDTESLCVLA GKMVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENGQEV IIHPLEEREP LPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIREEVEAY NCERSLQKVK RHPTLAKSEV
301: SGPTVAVKEE HRKSSDQERA AEISREHVER LKLSTEEVRS SKEEEAANFK GGPSNWDPYS EAMDVDSLKV SLASRGDPVT KSSSTKKMNG SGNAQKVGVE
401: ISVEEVTGEL GKKDTKHKDG EMTLKDAVKP KKKRKNKS

Arabidopsis Description

RRP45BExosome complex component RRP45B [Source:UniProtKB/Swiss-Prot;Acc:Q9M209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.