CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89318
CDX94304
CDX97358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60500.1	CDX89318	AT4G26630.1	25387881
AT3G60500.1	CDX94304	AT4G26630.1	25387881
AT3G60500.1	CDX97358	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41161	Canola	cytosol	95.45	96.33
CDY70752	Canola	cytosol	77.05	96.31
Bra007540.1-P	Field mustard	nucleus	94.55	95.41
AT3G12990.1	Thale cress	cytosol	62.95	90.23
AT3G60500.1	Thale cress	cytosol	88.18	88.58
CDX98419	Canola	nucleus	75.91	81.27
CDX67830	Canola	nucleus	75.23	80.54
Zm00001d045898_P001	Maize	cytosol, extracellular	22.05	63.4
GSMUA_Achr8P16380_001	Banana	cytosol	51.59	62.02
Solyc05g047420.2.1	Tomato	nucleus	56.14	55.76
Os02t0550700-01	Rice	cytosol	50.0	55.7
GSMUA_Achr6P25490_001	Banana	cytosol	49.32	53.85
TraesCS7A01G457300.1	Wheat	cytosol	48.64	53.5
Zm00001d016770_P002	Maize	nucleus	53.18	52.47
KXG30375	Sorghum	nucleus	53.18	52.12
TraesCS7B01G358800.3	Wheat	nucleus	52.95	52.01
HORVU7Hr1G105370.12	Barley	nucleus	52.95	52.01
TraesCS7D01G445900.2	Wheat	nucleus	52.73	51.9
HORVU6Hr1G027570.6	Barley	cytosol	52.73	51.79
TraesCS6A01G141100.2	Wheat	cytosol	52.73	51.79
VIT_18s0072g00880.t01	Wine grape	nucleus	44.32	51.59
TraesCS6B01G169200.2	Wheat	cytosol	52.5	51.56
TraesCS6D01G130400.3	Wheat	cytosol	52.5	51.56
KRH77682	Soybean	cytosol	50.68	51.03
Zm00001d036997_P001	Maize	cytosol	29.55	48.33
KRH27808	Soybean	nucleus	50.91	47.66
Zm00001d042612_P001	Maize	plastid	26.59	46.43
Zm00001d002336_P001	Maize	cytosol	16.36	40.91
Zm00001d033842_P001	Maize	cytosol	25.23	35.35
CDY22130	Canola	cytosol	17.27	26.39
CDY35960	Canola	cytosol	17.5	26.28
CDY28020	Canola	cytoskeleton, cytosol, nucleus	18.18	25.4
CDY63123	Canola	cytosol	16.36	23.92
CDY56983	Canola	cytosol	16.36	23.92
CDY33620	Canola	cytosol	9.09	20.0

Protein Annotations

MapMan:16.8.1.1.5	Gene3D:3.30.230.70	EnsemblPlants:CDX71803	ProteinID:CDX71803	ProteinID:CDX71803.1	InterPro:ExoRNase_PH_dom1
InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf	GO:GO:0000178	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00155522001
InterPro:IPR027408	PFAM:PF01138	PFAM:PF03725	InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097	PANTHER:PTHR11097:SF21
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Rrp45	SUPFAM:SSF54211	SUPFAM:SSF55666	UniParc:UPI0004EE9104	SEG:seg

Description

BnaC08g30710D

Coordinates

chrLK031795:-:646861..649250

Molecular Weight (calculated)

48535.9 Da

IEP (calculated)

6.913

GRAVY (calculated)

-0.460

Length

440 amino acids

Sequence
(BLAST)

001: MEGRLANMWR LTVNESKFVE TALQSEVRVD GRGLYDYRKL TIKFGKEYGS SEVQLGHTHV MGFVTAQLVQ PYKDRPNEGS LSIFTEFSPM ADPSFEPGRP
101: GESAVELGRI IDRGLRESRA VDTESLCVLA GKKVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENNQEV IIHSLEEREP VPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYI EEEVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIREEVEAY NREKSLQKVK RHPTLAKPEV
301: SGPIVVVKEG HKMSEDEEIA AEISREHVER LNLSSVELKS SKEQEAVAAS PGNFKGGPSN WDPYTEAMDV DSLKASLASK GESVTKSTIK KKTNDSGNVQ
401: KEVTGDLEMK DTAEATKHKS GEMTLKDAVK RKKKRKNKSS

Best Arabidopsis Sequence Match ( AT3G60500.1 )
(BLAST)

001: MEGRLANMWR LTVNESKFVE TALQSELRVD GRGLYDYRKL TIKFGKEYGS SEVQLGQTHV MGFVTAQLVQ PYKDRPNEGS LSIFTEFSPM ADPSFEPGRP
101: GESAVELGRI IDRGLRESRA VDTESLCVLA GKMVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENGQEV IIHPLEEREP LPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIREEVEAY NCERSLQKVK RHPTLAKSEV
301: SGPTVAVKEE HRKSSDQERA AEISREHVER LKLSTEEVRS SKEEEAANFK GGPSNWDPYS EAMDVDSLKV SLASRGDPVT KSSSTKKMNG SGNAQKVGVE
401: ISVEEVTGEL GKKDTKHKDG EMTLKDAVKP KKKRKNKS

Arabidopsis Description

RRP45BExosome complex component RRP45B [Source:UniProtKB/Swiss-Prot;Acc:Q9M209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.