CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89318
CDX94304
CDX97358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60500.1	CDX89318	AT4G26630.1	25387881
AT3G60500.1	CDX94304	AT4G26630.1	25387881
AT3G60500.1	CDX97358	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67830	Canola	nucleus	98.05	98.05
AT3G12990.1	Thale cress	cytosol	67.88	90.88
CDY70752	Canola	cytosol	77.37	90.34
CDY41161	Canola	cytosol	82.0	77.29
CDX71803	Canola	nucleus	81.27	75.91
AT3G60500.1	Thale cress	cytosol	80.29	75.34
Zm00001d045898_P001	Maize	cytosol, extracellular	23.84	64.05
GSMUA_Achr8P16380_001	Banana	cytosol	53.28	59.84
Os02t0550700-01	Rice	cytosol	54.5	56.71
TraesCS7A01G457300.1	Wheat	cytosol	53.53	55.0
GSMUA_Achr6P25490_001	Banana	cytosol	50.85	51.86
Solyc05g047420.2.1	Tomato	nucleus	54.99	51.02
Zm00001d016770_P002	Maize	nucleus	54.5	50.22
TraesCS7D01G445900.2	Wheat	nucleus	54.5	50.11
KXG30375	Sorghum	nucleus	54.74	50.11
HORVU7Hr1G105370.12	Barley	nucleus	54.5	50.0
TraesCS7B01G358800.3	Wheat	nucleus	54.5	50.0
HORVU6Hr1G027570.6	Barley	cytosol	54.26	49.78
TraesCS6A01G141100.2	Wheat	cytosol	54.26	49.78
TraesCS6B01G169200.2	Wheat	cytosol	54.01	49.55
TraesCS6D01G130400.3	Wheat	cytosol	53.77	49.33
KRH77682	Soybean	cytosol	51.34	48.28
Zm00001d036997_P001	Maize	cytosol	31.14	47.58
Zm00001d042612_P001	Maize	plastid	28.71	46.83
VIT_18s0072g00880.t01	Wine grape	nucleus	42.58	46.3
KRH27808	Soybean	nucleus	51.34	44.89
Zm00001d002336_P001	Maize	cytosol	17.76	41.48
Zm00001d033842_P001	Maize	cytosol	25.55	33.44
CDY22130	Canola	cytosol	18.73	26.74
CDY35960	Canola	cytosol	18.98	26.62
CDY28020	Canola	cytoskeleton, cytosol, nucleus	19.46	25.4
CDY63123	Canola	cytosol	17.76	24.25
CDY56983	Canola	cytosol	17.76	24.25
CDY33620	Canola	cytosol	9.73	20.0

Protein Annotations

MapMan:16.8.1.1.5	Gene3D:3.30.230.70	EnsemblPlants:CDX98419	ProteinID:CDX98419	ProteinID:CDX98419.1	InterPro:ExoRNase_PH_dom1
InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf	GO:GO:0000178	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00106010001
InterPro:IPR027408	PFAM:PF01138	PFAM:PF03725	InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097	PANTHER:PTHR11097:SF21
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Rrp45	SUPFAM:SSF54211	SUPFAM:SSF55666	UniParc:UPI0004EDD5A6	SEG:seg

Description

BnaC06g17800D

Coordinates

chrLK031904:+:1244261..1246634

Molecular Weight (calculated)

45404.2 Da

IEP (calculated)

8.230

GRAVY (calculated)

-0.523

Length

411 amino acids

Sequence
(BLAST)

001: MEGRLANMWR LTVNESKFVE TALQSELRVD GRGLYDYRKL TIKFGKEYGS SEVQLGHTHV MGFVTAQLVQ PYKDRPNEGS LSIFTEFSPM ADPSFEPGRP
101: GEYAVELGRI IDRGLRESRA VDTESLCVLA GKKVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENSQEV IIHSLEEREP LPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYV EEEVMCGRMT VTVNANGDIC AIQKPGEEGV NHSVILHCLR LASSRAAATT KIIREEVEAY NREKNLQKVK RHPTLAKSEV
301: SGPIVVVKEG HKKSSDEDKS AEMSQEHVEL KTSKEQEAVA SPATSKGTET RSVSSNPAIK GKTNDSGHAQ KEVTGDVEMK DTPKVTKHKD GEKTLKDAVK
401: PKKKKRKNKS S

Best Arabidopsis Sequence Match ( AT3G60500.1 )
(BLAST)

001: MEGRLANMWR LTVNESKFVE TALQSELRVD GRGLYDYRKL TIKFGKEYGS SEVQLGQTHV MGFVTAQLVQ PYKDRPNEGS LSIFTEFSPM ADPSFEPGRP
101: GESAVELGRI IDRGLRESRA VDTESLCVLA GKMVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENGQEV IIHPLEEREP LPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIREEVEAY NCERSLQKVK RHPTLAKSEV
301: SGPTVAVKEE HRKSSDQERA AEISREHVER LKLSTEEVRS SKEEEAANFK GGPSNWDPYS EAMDVDSLKV SLASRGDPVT KSSSTKKMNG SGNAQKVGVE
401: ISVEEVTGEL GKKDTKHKDG EMTLKDAVKP KKKRKNKS

Arabidopsis Description

RRP45BExosome complex component RRP45B [Source:UniProtKB/Swiss-Prot;Acc:Q9M209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.