CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98502
KRG98507
KRH46360
KRH46364

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60500.1	KRG98502	AT4G26630.1	25387881
AT3G60500.1	KRG98507	AT4G26630.1	25387881
AT3G60500.1	KRH46360	AT4G26630.1	25387881
AT3G60500.1	KRH46364	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27808	Soybean	nucleus	73.0	67.87
AT3G12990.1	Thale cress	cytosol	46.0	65.47
Zm00001d045898_P001	Maize	cytosol, extracellular	22.2	63.4
GSMUA_Achr8P16380_001	Banana	cytosol	52.17	62.3
CDY70752	Canola	cytosol	46.91	58.24
Solyc05g047420.2.1	Tomato	nucleus	53.55	52.82
GSMUA_Achr6P25490_001	Banana	cytosol	48.51	52.61
AT3G60500.1	Thale cress	cytosol	51.95	51.83
Bra007540.1-P	Field mustard	nucleus	51.49	51.61
CDY41161	Canola	cytosol	51.49	51.61
CDX67830	Canola	nucleus	48.51	51.58
Bra003416.1-P	Field mustard	nucleus	48.51	51.58
TraesCS7A01G457300.1	Wheat	cytosol	47.14	51.5
CDX98419	Canola	nucleus	48.28	51.34
CDX71803	Canola	nucleus	51.03	50.68
Os02t0550700-01	Rice	cytosol	45.31	50.13
VIT_18s0072g00880.t01	Wine grape	nucleus	42.79	49.47
Zm00001d002336_P001	Maize	cytosol	19.45	48.3
TraesCS7D01G445900.2	Wheat	nucleus	49.2	48.1
TraesCS6B01G169200.2	Wheat	cytosol	48.97	47.77
HORVU7Hr1G105370.12	Barley	nucleus	48.97	47.77
TraesCS7B01G358800.3	Wheat	nucleus	48.97	47.77
TraesCS6A01G141100.2	Wheat	cytosol	48.97	47.77
HORVU6Hr1G027570.6	Barley	cytosol	48.97	47.77
TraesCS6D01G130400.3	Wheat	cytosol	48.74	47.54
Zm00001d016770_P002	Maize	nucleus	48.51	47.53
Zm00001d036997_P001	Maize	cytosol	29.06	47.21
KXG30375	Sorghum	nucleus	47.83	46.55
Zm00001d042612_P001	Maize	plastid	24.94	43.25
Zm00001d033842_P001	Maize	cytosol	27.46	38.22
KRH01295	Soybean	plastid	5.95	28.89
KRH08468	Soybean	cytosol	17.85	27.27
KRH70124	Soybean	endoplasmic reticulum, nucleus	17.62	26.92
KRH45053	Soybean	cytosol, nucleus	17.39	25.17
KRH14064	Soybean	cytosol, nucleus, plastid	13.73	24.19
KRH16280	Soybean	nucleus	16.7	23.78
KRH01293	Soybean	cytosol, nucleus	6.18	21.77
KRH01298	Soybean	cytosol, nucleus, plastid	4.58	18.02
KRH44119	Soybean	plasma membrane	9.15	17.7

Protein Annotations

EntrezGene:100780196	MapMan:16.8.1.1.5	Gene3D:3.30.230.70	UniProt:A0A0R0LKL0	EMBL:ACUP02000681	InterPro:ExoRNase_PH_dom1
InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf	EnsemblPlantsGene:GLYMA_01G227700	GO:GO:0000178	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
InterPro:IPR027408	EnsemblPlants:KRH77682	ProteinID:KRH77682	ProteinID:KRH77682.1	PFAM:PF01138	PFAM:PF03725
InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097	PANTHER:PTHR11097:SF21	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Rrp45	SUPFAM:SSF54211
SUPFAM:SSF55666	UniParc:UPI0006ED5AE8	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:55600064..55602786

Molecular Weight (calculated)

48207.4 Da

IEP (calculated)

6.716

GRAVY (calculated)

-0.349

Length

437 amino acids

Sequence
(BLAST)

001: MEQRLANTWR MPRNDNKFIE TALLSDLRVD GRRPSDYRKL TIKLAKQDGS AEVHLGQTHV ITFVTAQLVR PYRDRPNEGS LSIFTEFSPM ADPSFEPGRP
101: TDAAVELGRV VDRGLRESRA IDTESLCVLS GKLVWAIRVD IHILDNAGNL VDAANIAALV SLLTFRRPEC SLTGEDGQDV VVHPPEERDP IPLIIHHLPI
201: AVTFGFFSNE NLLVIDPTHH EECVMTGRMT ATLNSNGDVC AIQKPGGESV SQSVIMHCLK LAHVKATDIT TKIKDAVEIH NNERMLRKIK RHSSSAAVDV
301: CGATAGFGGK QNPLDGDDLE CRATPSGQQH SKDGASKNFT GGPSSWDPYL ECVNSDLLKA SLASFRLFPL GFQFQMVSWC LDHFIHVYVT KPKEPPQEIK
401: TDSTPIDKAL TAGQDNGSKT LKDAVKSKHE EKKSIFQ

Best Arabidopsis Sequence Match ( AT3G60500.1 )
(BLAST)

001: MEGRLANMWR LTVNESKFVE TALQSELRVD GRGLYDYRKL TIKFGKEYGS SEVQLGQTHV MGFVTAQLVQ PYKDRPNEGS LSIFTEFSPM ADPSFEPGRP
101: GESAVELGRI IDRGLRESRA VDTESLCVLA GKMVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENGQEV IIHPLEEREP LPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIREEVEAY NCERSLQKVK RHPTLAKSEV
301: SGPTVAVKEE HRKSSDQERA AEISREHVER LKLSTEEVRS SKEEEAANFK GGPSNWDPYS EAMDVDSLKV SLASRGDPVT KSSSTKKMNG SGNAQKVGVE
401: ISVEEVTGEL GKKDTKHKDG EMTLKDAVKP KKKRKNKS

Arabidopsis Description

RRP45BExosome complex component RRP45B [Source:UniProtKB/Swiss-Prot;Acc:Q9M209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.