Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d013757_P010 | |
| Zm00001d033159_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60500.1 | Zm00001d013757_P010 | AT4G26630.1 | 25387881 |
| AT3G60500.1 | Zm00001d033159_P001 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045898_P001 | Maize | cytosol, extracellular | 32.51 | 94.77 |
| KXG30375 | Sorghum | nucleus | 93.72 | 93.1 |
| TraesCS6D01G130400.3 | Wheat | cytosol | 78.7 | 78.35 |
| Os02t0550700-01 | Rice | cytosol | 68.83 | 77.72 |
| TraesCS6B01G169200.2 | Wheat | cytosol | 77.8 | 77.46 |
| TraesCS6A01G141100.2 | Wheat | cytosol | 77.8 | 77.46 |
| HORVU6Hr1G027570.6 | Barley | cytosol | 77.58 | 77.23 |
| HORVU7Hr1G105370.12 | Barley | nucleus | 77.58 | 77.23 |
| TraesCS7D01G445900.2 | Wheat | nucleus | 76.91 | 76.73 |
| TraesCS7B01G358800.3 | Wheat | nucleus | 76.68 | 76.34 |
| TraesCS7A01G457300.1 | Wheat | cytosol | 64.13 | 71.5 |
| Zm00001d036997_P001 | Maize | cytosol | 41.26 | 68.4 |
| GSMUA_Achr8P16380_001 | Banana | cytosol | 54.93 | 66.94 |
| Zm00001d002336_P001 | Maize | cytosol | 26.01 | 65.91 |
| AT3G12990.1 | Thale cress | cytosol | 44.62 | 64.82 |
| CDY70752 | Canola | cytosol | 48.43 | 61.36 |
| Zm00001d042612_P001 | Maize | plastid | 34.53 | 61.11 |
| GSMUA_Achr6P25490_001 | Banana | cytosol | 52.69 | 58.31 |
| Solyc05g047420.2.1 | Tomato | nucleus | 54.71 | 55.08 |
| AT3G60500.1 | Thale cress | cytosol | 54.04 | 55.02 |
| Bra007540.1-P | Field mustard | nucleus | 53.59 | 54.82 |
| CDX98419 | Canola | nucleus | 50.22 | 54.5 |
| Bra003416.1-P | Field mustard | nucleus | 50.22 | 54.5 |
| CDX67830 | Canola | nucleus | 50.22 | 54.5 |
| CDY41161 | Canola | cytosol | 53.14 | 54.36 |
| CDX71803 | Canola | nucleus | 52.47 | 53.18 |
| VIT_18s0072g00880.t01 | Wine grape | nucleus | 44.39 | 52.38 |
| Zm00001d033842_P001 | Maize | cytosol | 35.2 | 50.0 |
| KRH77682 | Soybean | cytosol | 47.53 | 48.51 |
| KRH27808 | Soybean | nucleus | 47.98 | 45.53 |
| Zm00001d014880_P002 | Maize | extracellular | 19.73 | 30.66 |
| Zm00001d014882_P005 | Maize | cytosol | 18.16 | 30.11 |
| Zm00001d049855_P002 | Maize | nucleus | 12.78 | 26.39 |
| Zm00001d021033_P001 | Maize | cytosol | 7.17 | 22.54 |
| Zm00001d044450_P001 | Maize | cytosol | 6.05 | 22.31 |
| Zm00001d031643_P001 | Maize | cytosol | 17.26 | 21.63 |
| Zm00001d049854_P001 | Maize | cytosol | 6.5 | 21.17 |
Protein Annotations
| EntrezGene:100384304 | MapMan:16.8.1.1.5 | Gene3D:3.30.230.70 | UniProt:A0A096TT32 | ProteinID:AQK71612.1 | InterPro:ExoRNase_PH_dom1 |
| InterPro:ExoRNase_PH_dom2 | InterPro:ExoRNase_PH_dom2_sf | GO:GO:0000178 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR027408 |
| PFAM:PF01138 | PFAM:PF03725 | InterPro:PNPase/RNase_PH_dom_sf | PANTHER:PTHR11097 | PANTHER:PTHR11097:SF21 | InterPro:Ribosomal_S5_D2-typ_fold |
| InterPro:Rrp45 | SUPFAM:SSF54211 | SUPFAM:SSF55666 | UniParc:UPI000220EE2C | EnsemblPlantsGene:Zm00001d016770 | EnsemblPlants:Zm00001d016770_P002 |
| EnsemblPlants:Zm00001d016770_T002 | SEG:seg | : | : | : | : |
Description
Exosome complex component RRP45B
Coordinates
chr5:-:175413523..175419968
Molecular Weight (calculated)
48927.2 Da
IEP (calculated)
7.663
GRAVY (calculated)
-0.494
Length
446 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHLRWRPTV NERDFIECAL QSDLRVDGRH SFDFRKLKIT FGREDGSSEV QLGETHVMGY VTVQLVQPYR DRPNEGTLAI FTEFSPMADP SFEPGRPGEL
101: AIELGRVIDR GLRESRAVDM ESLCVVAGKH VWSVRVDLHI LDNGGNLIDA ANIAALAALS TFRRPECTVG GDDGQQVTVH DPEVRDPLPL TIHHMPIAVT
201: FAYFGEGNIV VLDPTYKEEA VMGGRMTAIV NSNGDVCAIQ KAGGEGVMSS VIMQCLRIAS VKAADITSKI KKAVDSYTTE KALKKVKRLP TSVPQKINVT
301: NVTMDGKGDG ELEKQSVQMH SDVQQISKGD ENQQSIKRNS PLTRDRIAKH KQTSTFIGGP SNWDPYSKGV TLRSLKISDL PDPPTMVKAS SREDAQPMTE
401: SSNAEVNTSS AVAAGESESH EIGSPKSLKD AIKPKHKRKK KKSDRS
101: AIELGRVIDR GLRESRAVDM ESLCVVAGKH VWSVRVDLHI LDNGGNLIDA ANIAALAALS TFRRPECTVG GDDGQQVTVH DPEVRDPLPL TIHHMPIAVT
201: FAYFGEGNIV VLDPTYKEEA VMGGRMTAIV NSNGDVCAIQ KAGGEGVMSS VIMQCLRIAS VKAADITSKI KKAVDSYTTE KALKKVKRLP TSVPQKINVT
301: NVTMDGKGDG ELEKQSVQMH SDVQQISKGD ENQQSIKRNS PLTRDRIAKH KQTSTFIGGP SNWDPYSKGV TLRSLKISDL PDPPTMVKAS SREDAQPMTE
401: SSNAEVNTSS AVAAGESESH EIGSPKSLKD AIKPKHKRKK KKSDRS
001: MEGRLANMWR LTVNESKFVE TALQSELRVD GRGLYDYRKL TIKFGKEYGS SEVQLGQTHV MGFVTAQLVQ PYKDRPNEGS LSIFTEFSPM ADPSFEPGRP
101: GESAVELGRI IDRGLRESRA VDTESLCVLA GKMVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENGQEV IIHPLEEREP LPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIREEVEAY NCERSLQKVK RHPTLAKSEV
301: SGPTVAVKEE HRKSSDQERA AEISREHVER LKLSTEEVRS SKEEEAANFK GGPSNWDPYS EAMDVDSLKV SLASRGDPVT KSSSTKKMNG SGNAQKVGVE
401: ISVEEVTGEL GKKDTKHKDG EMTLKDAVKP KKKRKNKS
101: GESAVELGRI IDRGLRESRA VDTESLCVLA GKMVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENGQEV IIHPLEEREP LPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIREEVEAY NCERSLQKVK RHPTLAKSEV
301: SGPTVAVKEE HRKSSDQERA AEISREHVER LKLSTEEVRS SKEEEAANFK GGPSNWDPYS EAMDVDSLKV SLASRGDPVT KSSSTKKMNG SGNAQKVGVE
401: ISVEEVTGEL GKKDTKHKDG EMTLKDAVKP KKKRKNKS
Arabidopsis Description
RRP45BExosome complex component RRP45B [Source:UniProtKB/Swiss-Prot;Acc:Q9M209]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.