Factsheet for Zm00001d014880_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90439	Sorghum	cytosol	95.47	95.8
Zm00001d014882_P005	Maize	cytosol	89.2	95.17
Os12t0403800-02	Rice	cytosol	89.55	90.49
TraesCS7D01G302500.1	Wheat	cytosol	86.41	86.71
TraesCS7B01G206000.1	Wheat	cytosol	86.41	86.71
TraesCS7A01G305800.1	Wheat	cytosol	86.06	86.36
VIT_04s0008g06260.t01	Wine grape	cytosol	79.44	79.44
KRH08468	Soybean	cytosol	78.75	79.02
KRH70124	Soybean	endoplasmic reticulum, nucleus	77.35	77.62
GSMUA_Achr4P23580_001	Banana	cytosol	80.84	76.82
HORVU7Hr1G072710.9	Barley	cytosol, plastid	86.76	75.23
PGSC0003DMT400032572	Potato	cytosol	75.26	75.0
AT3G07750.2	Thale cress	cytosol	74.56	74.83
Bra040025.1-P	Field mustard	cytosol	72.82	72.57
CDY22130	Canola	cytosol	72.82	72.57
Bra029674.1-P	Field mustard	cytosol	71.08	69.62
CDY35960	Canola	cytosol	71.08	69.62
Solyc08g007520.2.1	Tomato	nucleus	75.61	65.76
CDY28020	Canola	cytoskeleton, cytosol, nucleus	69.34	63.17
KRH14064	Soybean	cytosol, nucleus, plastid	54.01	62.5
Zm00001d045898_P001	Maize	cytosol, extracellular	15.33	28.76
Zm00001d021033_P001	Maize	cytosol	13.59	27.46
Zm00001d049854_P001	Maize	cytosol	12.89	27.01
Zm00001d044450_P001	Maize	cytosol	11.15	26.45
Zm00001d049855_P002	Maize	nucleus	17.77	23.61
Zm00001d042612_P001	Maize	plastid	20.21	23.02
Zm00001d031643_P001	Maize	cytosol	27.87	22.47
Zm00001d002336_P001	Maize	cytosol	13.24	21.59
Zm00001d036997_P001	Maize	cytosol	18.82	20.07
Zm00001d016770_P002	Maize	nucleus	30.66	19.73
Zm00001d033842_P001	Maize	cytosol	15.33	14.01

Protein Annotations

EntrezGene:100856959	MapMan:16.8.1.1.3	Gene3D:3.30.230.70	ProteinID:AQK67414.1	ProteinID:AQK67417.1	ProteinID:AQK67418.1
UniProt:B4G0W6	EMBL:BT043004	EMBL:BT066113	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf
InterPro:IPR027408	PFAM:PF01138	PFAM:PF03725	InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097	PANTHER:PTHR11097:SF8
InterPro:Ribosomal_S5_D2-typ_fold	SUPFAM:SSF54211	SUPFAM:SSF55666	UniParc:UPI00017B7870	EnsemblPlantsGene:Zm00001d014880	EnsemblPlants:Zm00001d014880_P002
EnsemblPlants:Zm00001d014880_T002	SEG:seg	:	:	:	:

Description

3'-5'-exoribonuclease family protein

Coordinates

chr5:-:66843996..66850437

Molecular Weight (calculated)

30159.8 Da

IEP (calculated)

4.453

GRAVY (calculated)

0.092

Length

287 amino acids

Sequence
(BLAST)

001: MVGLSEGEKH FIRGGIAQDV RTDGRRRLQF RSLSVQTGVI PQANGSARVR LGATEIIASV KAELGKPSIL HPDKGKVAIF VDCSPTAEPL FEGRGSEELS
101: AELSVSLQRC LLGGKSGAGA AIDLSSLIVV DGKVCWDLYI DGLVVSSDGN LLDALAVAIK VALSDTGIPK VNVSVSAASD EEPEVDVSDE EFLQFDTSGV
201: PVIITLTKVG RHYIVDATSE EESQMSSAVS VSVNRHGQIC GLTKRGGAGL DPSVIFDMIS VAKHVSQQFI SLLDSEIAAA EAEEEAQ

Best Arabidopsis Sequence Match ( AT3G07750.2 )
(BLAST)

001: MGLSLGEQHF IKGGIAQDLR TDGRKRLTYR PIYVETGVIP QANGSARVRI GGTDVIASVK AEIGRPSSLQ PDKGKVAVFI DCSPTAEPTF GGRGGEELSS
101: ELALALQRCL LGGKSGAGAG INLSSLLIKE GKVCWDLYID GLVISSDGNL LDALGAAIKA ALTNTAIPKV NVSAEVADDE QPEIDISDEE YLQFDTSSVP
201: VIVTLTKVGT HYIVDATAEE ESQMSSAVSI SVNRTGHICG LTKRSGSGLD PSVILDMISV AKHVTETLMS KLDSEISAAE ACEDES

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9FPI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.