Factsheet for Zm00001d049855_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15299	Sorghum	cytosol	80.56	56.86
TraesCS4A01G239300.1	Wheat	cytosol, nucleus, plastid	70.37	49.67
TraesCS4D01G074300.1	Wheat	cytosol	70.37	49.67
TraesCS4B01G075600.1	Wheat	cytosol, nucleus, plastid	70.37	49.67
Os11t0311300-03	Rice	cytosol	67.13	47.39
Zm00001d031643_P001	Maize	cytosol	76.85	46.63
HORVU4Hr1G012650.14	Barley	cytosol	68.98	44.21
KRH01293	Soybean	cytosol, nucleus	25.0	43.55
KRH01295	Soybean	plastid	16.67	40.0
GSMUA_Achr7P02490_001	Banana	cytosol	53.24	39.79
CDY33620	Canola	cytosol	33.33	36.0
PGSC0003DMT400019417	Potato	cytosol	50.46	35.97
AT1G60080.1	Thale cress	cytosol	48.15	34.44
KRH45053	Soybean	cytosol, nucleus	48.15	34.44
Solyc10g080130.1.1	Tomato	cytosol	49.07	34.42
VIT_08s0007g08550.t01	Wine grape	cytosol	49.54	34.41
Bra027816.1-P	Field mustard	cytosol	47.69	34.22
CDY63123	Canola	cytosol	47.69	34.22
CDY56983	Canola	cytosol	47.69	34.22
KRH16280	Soybean	nucleus	48.61	34.2
Solyc06g075390.2.1	Tomato	nucleus	50.46	33.75
PGSC0003DMT400060984	Potato	golgi	49.07	32.22
Zm00001d045898_P001	Maize	cytosol, extracellular	19.91	28.1
Zm00001d002336_P001	Maize	cytosol	15.28	18.75
Zm00001d042612_P001	Maize	plastid	21.76	18.65
Zm00001d014882_P005	Maize	cytosol	22.69	18.22
Zm00001d036997_P001	Maize	cytosol	22.22	17.84
Zm00001d014880_P002	Maize	extracellular	23.61	17.77
Zm00001d033842_P001	Maize	cytosol	20.83	14.33
KRH01298	Soybean	cytosol, nucleus, plastid	6.94	13.51
Zm00001d016770_P002	Maize	nucleus	26.39	12.78
Zm00001d021033_P001	Maize	cytosol	6.94	10.56
Zm00001d044450_P001	Maize	cytosol	5.09	9.09
Zm00001d049854_P001	Maize	cytosol	5.09	8.03

Protein Annotations

EnsemblPlants:Zm00001d049855_P002	EnsemblPlants:Zm00001d049855_T002	EnsemblPlantsGene:Zm00001d049855	Gene3D:3.30.230.70	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2
InterPro:ExoRNase_PH_dom2_sf	InterPro:IPR027408	InterPro:PNPase/RNase_PH_dom_sf	InterPro:Ribosomal_S5_D2-typ_fold	PANTHER:PTHR11097	PANTHER:PTHR11097:SF20
PFAM:PF01138	PFAM:PF03725	ProteinID:AQK51481.1	SEG:seg	SUPFAM:SSF54211	SUPFAM:SSF55666
UniParc:UPI0008433AAE	UniProt:A0A1D6PYF2	MapMan:16.8.1.1.4	:	:	:

Description

3'-5'-exoribonuclease family protein

Coordinates

chr4:+:48345732..48358157

Molecular Weight (calculated)

23535.6 Da

IEP (calculated)

6.512

GRAVY (calculated)

0.076

Length

216 amino acids

Sequence
(BLAST)

001: MVRTASGEHR GSVIDAAEIG LGTLRYPFRR IRPSPSLLAT PCSRMLNLKD LCLITGKASW LAYLDIYCLN ADGSLFDAAL ISAVAAFTHL EIPLVSVGDD
101: GKLFTVGGND GKNKFELVNR EKRKLTLGDI PLSLTCALHK GSILTDPTSE EESIIETYVT VVVDSSDRLV SLQKVGGTVT SMATIKECIS LAKERRLRLR
201: EILIDSVKAM EVDHTE

Best Arabidopsis Sequence Match ( AT1G60080.1 )
(BLAST)

001: MGIPDAAQDL STEMEVDAFR RIFPLRFFER HLSESLRPDG RQLGKARDTI VNLGLVSTAD GSALAKIGST TMLAAIRMEV MTPSTDSPDE GCIAIEFHMP
101: PICSPTVRPG RPAEAAPVIS KRLSDTILSS GMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLAA VAAFSNLQIP IVALNDNGRI VAVTGEKDQD
201: NALITEKEAV NKEKRKLTLK NIPFSLTCIL HKNYILADPT TEEESIMDTL VTVVLDSSDQ MVSFYKSGGA ALAYSSAIKS CVELARKRAK ELKQILGEMD
301: ID

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.