CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16280	Soybean	nucleus	90.73	89.25
KRH01295	Soybean	plastid	25.17	84.44
KRH01293	Soybean	cytosol, nucleus	33.11	80.65
VIT_08s0007g08550.t01	Wine grape	cytosol	77.81	75.56
PGSC0003DMT400019417	Potato	cytosol	73.84	73.6
Solyc10g080130.1.1	Tomato	cytosol	73.84	72.4
GSMUA_Achr7P02490_001	Banana	cytosol	67.55	70.59
AT1G60080.1	Thale cress	cytosol	70.53	70.53
Bra027816.1-P	Field mustard	cytosol	70.2	70.43
CDY56983	Canola	cytosol	70.2	70.43
CDY63123	Canola	cytosol	70.2	70.43
Solyc06g075390.2.1	Tomato	nucleus	74.5	69.66
KRH01298	Soybean	cytosol, nucleus, plastid	23.18	63.06
PGSC0003DMT400060984	Potato	golgi	67.88	62.31
TraesCS4A01G239300.1	Wheat	cytosol, nucleus, plastid	57.28	56.54
TraesCS4D01G074300.1	Wheat	cytosol	56.95	56.21
TraesCS4B01G075600.1	Wheat	cytosol, nucleus, plastid	56.95	56.21
Os11t0311300-03	Rice	cytosol	55.63	54.9
EES15299	Sorghum	cytosol	54.64	53.92
Zm00001d021033_P001	Maize	cytosol	25.17	53.52
Zm00001d049854_P001	Maize	cytosol	23.51	51.82
HORVU4Hr1G012650.14	Barley	cytosol	57.28	51.34
Zm00001d044450_P001	Maize	cytosol	20.2	50.41
Zm00001d049855_P002	Maize	nucleus	34.44	48.15
CDY33620	Canola	cytosol	31.13	47.0
Zm00001d031643_P001	Maize	cytosol	53.31	45.22
KRH70124	Soybean	endoplasmic reticulum, nucleus	25.83	27.27
KRH08468	Soybean	cytosol	25.83	27.27
KRH14064	Soybean	cytosol, nucleus, plastid	18.21	22.18
KRH44119	Soybean	plasma membrane	15.23	20.35
KRH77682	Soybean	cytosol	25.17	17.39
KRH27808	Soybean	nucleus	25.17	16.17

Protein Annotations

EntrezGene:100776087	MapMan:16.8.1.1.4	Gene3D:3.30.230.70	EMBL:ACUP02004985	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2
InterPro:ExoRNase_PH_dom2_sf	EnsemblPlantsGene:GLYMA_08G246800	GO:GO:0000176	GO:GO:0000177	GO:GO:0000467	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0017091	GO:GO:0034427	GO:GO:0034473	GO:GO:0034475	GO:GO:0034476
GO:GO:0043928	GO:GO:0071028	GO:GO:0071035	GO:GO:0071038	GO:GO:0071042	UniProt:I1KWF8
InterPro:IPR027408	EnsemblPlants:KRH45053	ProteinID:KRH45053	ProteinID:KRH45053.1	PFAM:PF01138	PFAM:PF03725
InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097	PANTHER:PTHR11097:SF20	InterPro:Ribosomal_S5_D2-typ_fold	SUPFAM:SSF54211	SUPFAM:SSF55666
UniParc:UPI0002337F76	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:21365906..21369914

Molecular Weight (calculated)

32836.7 Da

IEP (calculated)

4.872

GRAVY (calculated)

0.001

Length

302 amino acids

Sequence
(BLAST)

001: MGLPNVSEDL SSEMEVDAFR RLFPLRYFER HLAESIRPDG RPLGKARETS IFLGAVASAN GSALVKIGST TILTAIKMEV MTPSLESPDE GCLAIDFHMP
101: PICSPIVRPG RPAEASPVVS KQLSDTISSS KMIDLKELSL VSGKAAWMAY LDIYCLDADG ALFDAALLSA VASLSHLQIP VVAMNDDGKI VLVSEEDGQK
201: REQEPVNKEK RKLTLRSIPF SLTCILHKNY ILADPTAEEE SIMETHVTVV LDTSGQLISL YKPGGPVLAY TSAIQDCAAL TRQRVKELKS FLDKANSAME
301: VE

Best Arabidopsis Sequence Match ( AT1G60080.1 )
(BLAST)

001: MGIPDAAQDL STEMEVDAFR RIFPLRFFER HLSESLRPDG RQLGKARDTI VNLGLVSTAD GSALAKIGST TMLAAIRMEV MTPSTDSPDE GCIAIEFHMP
101: PICSPTVRPG RPAEAAPVIS KRLSDTILSS GMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLAA VAAFSNLQIP IVALNDNGRI VAVTGEKDQD
201: NALITEKEAV NKEKRKLTLK NIPFSLTCIL HKNYILADPT TEEESIMDTL VTVVLDSSDQ MVSFYKSGGA ALAYSSAIKS CVELARKRAK ELKQILGEMD
301: ID

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.