CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60500.1	EER91265	AT4G26630.1	25387881
AT3G60500.1	OQU91413	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016770_P002	Maize	nucleus	93.1	93.72
Zm00001d045898_P001	Maize	cytosol, extracellular	31.85	93.46
TraesCS6D01G130400.3	Wheat	cytosol	79.51	79.69
Os02t0550700-01	Rice	cytosol	69.93	79.49
TraesCS6A01G141100.2	Wheat	cytosol	78.84	79.02
TraesCS6B01G169200.2	Wheat	cytosol	78.84	79.02
HORVU6Hr1G027570.6	Barley	cytosol	78.62	78.79
HORVU7Hr1G105370.12	Barley	nucleus	77.95	78.12
TraesCS7D01G445900.2	Wheat	nucleus	77.51	77.85
TraesCS7B01G358800.3	Wheat	nucleus	77.51	77.68
TraesCS7A01G457300.1	Wheat	cytosol	64.59	72.5
Zm00001d036997_P001	Maize	cytosol	40.76	68.03
GSMUA_Achr8P16380_001	Banana	cytosol	55.01	67.49
AT3G12990.1	Thale cress	cytosol	44.77	65.47
Zm00001d002336_P001	Maize	cytosol	25.61	65.34
CDY70752	Canola	cytosol	48.55	61.93
Zm00001d042612_P001	Maize	plastid	33.85	60.32
GSMUA_Achr6P25490_001	Banana	cytosol	52.56	58.56
Solyc05g047420.2.1	Tomato	nucleus	54.79	55.53
Bra007540.1-P	Field mustard	nucleus	53.23	54.82
AT3G60500.1	Thale cress	cytosol	53.45	54.79
CDX98419	Canola	nucleus	50.11	54.74
CDX67830	Canola	nucleus	50.11	54.74
Bra003416.1-P	Field mustard	nucleus	50.11	54.74
CDY41161	Canola	cytosol	52.56	54.13
CDX71803	Canola	nucleus	52.12	53.18
VIT_18s0072g00880.t01	Wine grape	nucleus	43.43	51.59
Zm00001d033842_P001	Maize	cytosol	34.74	49.68
KRH77682	Soybean	cytosol	46.55	47.83
KRH27808	Soybean	nucleus	47.22	45.11
EER90439	Sorghum	cytosol	20.27	31.82
OQU78915	Sorghum	cytoskeleton, cytosol, nucleus	19.6	30.66
EES15299	Sorghum	cytosol	17.59	25.82

Protein Annotations

MapMan:16.8.1.1.5	Gene3D:3.30.230.70	UniProt:A0A194YRB7	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf
GO:GO:0000178	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR027408	EnsemblPlants:KXG30375	ProteinID:KXG30375
ProteinID:KXG30375.1	ProteinID:KXG30378.1	PFAM:PF01138	PFAM:PF03725	InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097
PANTHER:PTHR11097:SF21	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Rrp45	EnsemblPlantsGene:SORBI_3004G173100	SUPFAM:SSF54211	SUPFAM:SSF55666
UniParc:UPI0001C80CFB	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:52579916..52584893

Molecular Weight (calculated)

49127.3 Da

IEP (calculated)

6.449

GRAVY (calculated)

-0.482

Length

449 amino acids

Sequence
(BLAST)

001: MAMEHLRWRP TVNERDFIER ALQSDLRVDG RHSFDFRKLK VTFGREDGSS EVQLGETHVM GYVTAQLVQP YRDRPNEGTL AIFTEFSPMA DPAFEPGRPG
101: ESAIELGRVI DRGLRESRAV DMESLCVVAG KHVWSVRVDL HILDNGGNLI DAANIAALAA LSTFRRPECT VGGDDGQQVT VHDPEVRDPL PLTIHHMPIA
201: VTFAYFGEGN IVVLDPTYKE EAVMGGRMTV TVNSNGDVCA IQKAGGEGVM SSVIMQCLRI ASVKAADITS KIKKAVDSYT TEKALKKVKR LPTSVPQKIN
301: VTDVIMEDKG DGELEKQTVQ MPSDVQQISK GDEDHQSIKR NSPLTGDRIA KHKQTSTFIG GTSNWDPYCK GVSLSSLRLS DLPDPPTIVK MSSQEDAQPM
401: TESSNAEVNT SSAVAAGESD ESQEVGSPKS LKDAIKPKHK RKKKKSDKS

Best Arabidopsis Sequence Match ( AT3G60500.1 )
(BLAST)

001: MEGRLANMWR LTVNESKFVE TALQSELRVD GRGLYDYRKL TIKFGKEYGS SEVQLGQTHV MGFVTAQLVQ PYKDRPNEGS LSIFTEFSPM ADPSFEPGRP
101: GESAVELGRI IDRGLRESRA VDTESLCVLA GKMVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENGQEV IIHPLEEREP LPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIREEVEAY NCERSLQKVK RHPTLAKSEV
301: SGPTVAVKEE HRKSSDQERA AEISREHVER LKLSTEEVRS SKEEEAANFK GGPSNWDPYS EAMDVDSLKV SLASRGDPVT KSSSTKKMNG SGNAQKVGVE
401: ISVEEVTGEL GKKDTKHKDG EMTLKDAVKP KKKRKNKS

Arabidopsis Description

RRP45BExosome complex component RRP45B [Source:UniProtKB/Swiss-Prot;Acc:Q9M209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.