Factsheet for VIT_17s0000g04230.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0645200-01	Rice	cytosol, plastid	18.95	82.0
VIT_14s0083g00170.t01	Wine grape	cytosol	60.09	79.27
Zm00001d033223_P003	Maize	cytosol	26.66	74.25
KRH03820	Soybean	cytosol, mitochondrion, nucleus, plasma membrane	57.47	67.45
PGSC0003DMT400059378	Potato	cytosol, plastid	64.41	67.42
GSMUA_Achr7P01240_001	Banana	cytosol	65.64	65.94
Solyc12g038340.1.1	Tomato	nucleus	62.87	65.81
GSMUA_Achr4P22890_001	Banana	cytosol	66.56	65.75
TraesCS5D01G384000.3	Wheat	mitochondrion	60.86	64.44
TraesCS5B01G376300.1	Wheat	mitochondrion	60.71	64.27
TraesCS5A01G374400.3	Wheat	mitochondrion	60.4	63.95
KXG24018	Sorghum	mitochondrion, plastid	58.4	63.48
Zm00001d013692_P001	Maize	cytosol	59.32	63.22
Zm00001d031081_P001	Maize	endoplasmic reticulum, vacuole	51.77	61.54
HORVU5Hr1G092900.2	Barley	mitochondrion	59.94	61.07
Os12t0617100-01	Rice	mitochondrion	57.01	60.96
KRH54799	Soybean	plastid	63.79	60.7
EER91168	Sorghum	plastid	59.32	53.32
VIT_13s0139g00250.t01	Wine grape	cytosol	11.71	18.23
VIT_06s0009g01100.t01	Wine grape	plastid	5.39	18.13
VIT_09s0002g00390.t01	Wine grape	mitochondrion, plastid	12.79	14.34

Protein Annotations

KEGG:00270+5.3.1.23	EntrezGene:100243979	wikigene:100243979	MapMan:17.4.1.2.3.4	Gene3D:3.40.50.10470	ProteinID:CBI15406
ProteinID:CBI15406.3	UniProt:D7SIU5	EMBL:FN594950	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0044237	InterPro:IF-2B-related
EntrezGene:LOC100243979	wikigene:LOC100243979	InterPro:NagB/RpiA_transferase-like	PFAM:PF01008	PANTHER:PTHR10233	PANTHER:PTHR10233:SF27
SUPFAM:SSF100950	TIGR:TC60959	UniParc:UPI0001BE0C29	ArrayExpress:VIT_17s0000g04230	EnsemblPlantsGene:VIT_17s0000g04230	EnsemblPlants:VIT_17s0000g04230.t01
RefSeq:XP_002275165	RefSeq:XP_002275165.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr17:+:4483086..4493024

Molecular Weight (calculated)

71183.7 Da

IEP (calculated)

9.889

GRAVY (calculated)

-0.271

Length

649 amino acids

Sequence
(BLAST)

001: MEARRTSRIP IDPKVRQVGF FAPGALRDRS QSGPLGFSSS PPVSNISPTG NSLSPVMIPP PRHASDNFVL SRPLAVPVSD STLRPPAVED RMAVGSYDAS
101: ELLLGTSASS RIGDGEFSED YSVFFRRSSS GKFASSLPSG GFDSTAMKIN PPAVVPAVKK YAAKKPAAVI EKSGGAVAEM QNELPTSSKP LKEKTTKAER
201: RALQESQRAA KAAGKAGGNK PAAASGAATP MKEKASKAVK QVPSSVAASD KKGGERIPEK DKKKDVPPPR MQFDDKNRVE KAKRRAVVKP TEARNRVELF
301: RHLPQYEHGT QLPKLESKFF QLDPVHPAVQ KVGFQYLAGD IVGGNARCIA MLRAFQEAIK DYSMPPEKTL ARDLTAKISS YVSFLNECRP LSISMGNSIR
401: FLKNRIAKLP LTVSESEAKD ALYSDIDRFI NEKIVLADKV IVRHAATKIR DGDVLLTYGF SCVVEMTMLY AHELGRQFRV VVVDSHPKFE GQALLRRLVE
501: KGLSCSYTQI NAVSYIMHEV TRVFLGAASI FSNGTVYSRV GTACVAMVAH AFRVPVLICC EAYKFHERVQ LDSICSNELG DPDVISKVAG RADVNYLDNW
601: RDKENLQLLN LIYDATPSDY VSMIITDYGM VPPTSVPVIV REYREHLWI

Best Arabidopsis Sequence Match ( AT5G38640.1 )
(BLAST)

001: MESRRNPRAV VDPKVRQVGF FTSSQPDSST QQQQPDPIAA TSASSSSSTI SPSGNSLSPV MIPPPRLNSS DTFPLRVAVA GAAASAVSPS SFSYSSRRDF
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV

Arabidopsis Description

At5g38640 [Source:UniProtKB/TrEMBL;Acc:Q9FFV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.