Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0645200-01 | Rice | cytosol, plastid | 22.99 | 93.33 |
| Zm00001d033223_P003 | Maize | cytosol | 34.65 | 90.56 |
| TraesCS5D01G384000.3 | Wheat | mitochondrion | 82.59 | 82.06 |
| TraesCS5B01G376300.1 | Wheat | mitochondrion | 82.1 | 81.57 |
| TraesCS5A01G374400.3 | Wheat | mitochondrion | 81.94 | 81.4 |
| EER91168 | Sorghum | plastid | 94.75 | 79.92 |
| HORVU5Hr1G092900.2 | Barley | mitochondrion | 81.44 | 77.86 |
| VIT_14s0083g00170.t01 | Wine grape | cytosol | 59.61 | 73.78 |
| AT2G44070.1 | Thale cress | cytosol | 39.74 | 72.67 |
| Zm00001d031081_P001 | Maize | endoplasmic reticulum, vacuole | 58.62 | 65.38 |
| GSMUA_Achr4P22890_001 | Banana | cytosol | 68.64 | 63.62 |
| GSMUA_Achr7P01240_001 | Banana | cytosol | 66.5 | 62.69 |
| CDY49077 | Canola | cytosol, plastid | 51.89 | 61.6 |
| PGSC0003DMT400026040 | Potato | cytosol | 64.04 | 61.22 |
| KRH03820 | Soybean | cytosol, mitochondrion, nucleus, plasma membrane | 55.34 | 60.94 |
| Solyc02g089810.2.1 | Tomato | nucleus | 63.55 | 60.75 |
| CDY01647 | Canola | cytosol | 62.07 | 60.1 |
| KRH01494 | Soybean | nucleus | 62.56 | 59.91 |
| CDX74513 | Canola | nucleus | 61.74 | 59.68 |
| Bra028196.1-P | Field mustard | nucleus | 61.58 | 59.52 |
| VIT_17s0000g04230.t01 | Wine grape | plastid | 63.22 | 59.32 |
| AT5G38640.1 | Thale cress | cytosol | 61.9 | 58.72 |
| KRG93828 | Soybean | endoplasmic reticulum, nucleus | 63.55 | 58.64 |
| KRH18264 | Soybean | cytosol | 63.05 | 58.27 |
| PGSC0003DMT400059378 | Potato | cytosol, plastid | 58.29 | 57.26 |
| Solyc12g038340.1.1 | Tomato | nucleus | 57.64 | 56.61 |
| CDY27424 | Canola | cytosol | 10.84 | 54.1 |
| CDY16477 | Canola | mitochondrion | 56.16 | 52.05 |
| CDX77270 | Canola | mitochondrion | 56.16 | 52.05 |
| Bra014165.1-P | Field mustard | mitochondrion | 55.99 | 51.9 |
| KRH54799 | Soybean | plastid | 56.65 | 50.59 |
| AT1G48970.1 | Thale cress | mitochondrion | 54.68 | 50.0 |
| Zm00001d041758_P001 | Maize | cytoskeleton, cytosol, peroxisome | 14.61 | 24.52 |
| Zm00001d033046_P002 | Maize | cytosol | 13.96 | 20.43 |
| Zm00001d014246_P004 | Maize | cytosol | 14.12 | 19.28 |
Protein Annotations
| KEGG:00270+5.3.1.23 | MapMan:17.4.1.2.3.4 | Gene3D:3.40.50.10470 | UniProt:A0A1D6GLI2 | ProteinID:AQK64172.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 | GO:GO:0006412 |
| GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0044237 | InterPro:IF-2B-related | InterPro:NagB/RpiA_transferase-like | PFAM:PF01008 | PANTHER:PTHR10233 |
| PANTHER:PTHR10233:SF29 | SUPFAM:SSF100950 | UniParc:UPI0008445C81 | EnsemblPlantsGene:Zm00001d013692 | EnsemblPlants:Zm00001d013692_P001 | EnsemblPlants:Zm00001d013692_T001 |
| SEG:seg | : | : | : | : | : |
Description
Translation initiation factor eIF-2B delta subunit
Coordinates
chr5:+:17661017..17667360
Molecular Weight (calculated)
66600.9 Da
IEP (calculated)
9.035
GRAVY (calculated)
-0.317
Length
609 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLRRPPRSS SGGVEPKIRQ VGFFTPDASA PSEPMPPAAV VQAPSAQQRP VTASPPASDD FSQGRLSPVM IPPPRHADHL ALGPHPPAAA DVVLATSAPV
101: RSSPRLDIVS EIGDDDSWSR APSAVELEEN KCGLAEIRNE GAPASIPQKQ KTSKAERRAI QEAQRAAKAA AKEADKSGKS AGAAMSKQAK PAKTAQKKDV
201: PQAASTLASE KKATERPPER EKKLDAPHPR MQFDDVHKVE KAKKRAVVNQ SEAQNRVELF RHLPQYVHGT QLPDLESKFF QLEPMHPSVY KVGLQYLSGE
301: VSGGNDRCVA MLLAFKEAIK DYTTPTNKTL SRDLTAKISS YVSFLIECRP LSISMGNAIR FLKSRIAKLP HALSESEAKT SLQSDIDRFI NEKIVLADKV
401: IVSHAITKVR DNDVLLTYGS STVVEMILDY AHELGRNFRV VVVDSRPKLE GQGLLRRLVA KGINCTYTHI NAISYIMHEV TRVLLGASSI LSNGTVYSRV
501: GTASVAMVAH AFGVPVLVCC EAYKFHERVQ LDSICANELG DPDVILKIPG KAEDHLKNWA DSANLQLLNL TYDATPPDYV SMIITDYGML PPTSVPVIVR
601: EYRKEQLWI
101: RSSPRLDIVS EIGDDDSWSR APSAVELEEN KCGLAEIRNE GAPASIPQKQ KTSKAERRAI QEAQRAAKAA AKEADKSGKS AGAAMSKQAK PAKTAQKKDV
201: PQAASTLASE KKATERPPER EKKLDAPHPR MQFDDVHKVE KAKKRAVVNQ SEAQNRVELF RHLPQYVHGT QLPDLESKFF QLEPMHPSVY KVGLQYLSGE
301: VSGGNDRCVA MLLAFKEAIK DYTTPTNKTL SRDLTAKISS YVSFLIECRP LSISMGNAIR FLKSRIAKLP HALSESEAKT SLQSDIDRFI NEKIVLADKV
401: IVSHAITKVR DNDVLLTYGS STVVEMILDY AHELGRNFRV VVVDSRPKLE GQGLLRRLVA KGINCTYTHI NAISYIMHEV TRVLLGASSI LSNGTVYSRV
501: GTASVAMVAH AFGVPVLVCC EAYKFHERVQ LDSICANELG DPDVILKIPG KAEDHLKNWA DSANLQLLNL TYDATPPDYV SMIITDYGML PPTSVPVIVR
601: EYRKEQLWI
001: MESRRNPRAV VDPKVRQVGF FTSSQPDSST QQQQPDPIAA TSASSSSSTI SPSGNSLSPV MIPPPRLNSS DTFPLRVAVA GAAASAVSPS SFSYSSRRDF
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV
Arabidopsis Description
At5g38640 [Source:UniProtKB/TrEMBL;Acc:Q9FFV8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.