Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G376300.1 | Wheat | mitochondrion | 99.18 | 99.18 |
| TraesCS5A01G374400.3 | Wheat | mitochondrion | 98.86 | 98.86 |
| Os03t0645200-01 | Rice | cytosol, plastid | 23.33 | 95.33 |
| HORVU5Hr1G092900.2 | Barley | mitochondrion | 97.39 | 93.72 |
| Zm00001d033223_P003 | Maize | cytosol | 32.46 | 85.41 |
| Zm00001d013692_P001 | Maize | cytosol | 82.06 | 82.59 |
| AT2G44070.1 | Thale cress | cytosol | 40.95 | 75.38 |
| VIT_14s0083g00170.t01 | Wine grape | cytosol | 60.2 | 75.0 |
| EER91168 | Sorghum | plastid | 84.18 | 71.47 |
| GSMUA_Achr4P22890_001 | Banana | cytosol | 70.96 | 66.21 |
| GSMUA_Achr7P01240_001 | Banana | cytosol | 69.0 | 65.48 |
| CDY49077 | Canola | cytosol, plastid | 53.18 | 63.55 |
| CDY01647 | Canola | cytosol | 63.95 | 62.32 |
| CDX74513 | Canola | nucleus | 63.95 | 62.22 |
| Bra028196.1-P | Field mustard | nucleus | 63.78 | 62.06 |
| PGSC0003DMT400026040 | Potato | cytosol | 63.78 | 61.38 |
| Solyc02g089810.2.1 | Tomato | nucleus | 63.46 | 61.07 |
| KRH03820 | Soybean | cytosol, mitochondrion, nucleus, plasma membrane | 54.98 | 60.94 |
| VIT_17s0000g04230.t01 | Wine grape | plastid | 64.44 | 60.86 |
| AT5G38640.1 | Thale cress | cytosol | 63.62 | 60.75 |
| KRH01494 | Soybean | nucleus | 62.81 | 60.53 |
| KRH18264 | Soybean | cytosol | 63.95 | 59.48 |
| KRG93828 | Soybean | endoplasmic reticulum, nucleus | 63.95 | 59.39 |
| PGSC0003DMT400059378 | Potato | cytosol, plastid | 59.71 | 59.03 |
| Solyc12g038340.1.1 | Tomato | nucleus | 58.89 | 58.23 |
| CDY27424 | Canola | cytosol | 11.42 | 57.38 |
| KRH54799 | Soybean | plastid | 57.59 | 51.76 |
| CDY16477 | Canola | mitochondrion | 55.46 | 51.75 |
| CDX77270 | Canola | mitochondrion | 55.46 | 51.75 |
| Bra014165.1-P | Field mustard | mitochondrion | 55.3 | 51.6 |
| AT1G48970.1 | Thale cress | mitochondrion | 54.16 | 49.85 |
| TraesCS5D01G121400.1 | Wheat | cytosol | 14.03 | 23.76 |
| TraesCS1D01G135300.2 | Wheat | plastid | 13.7 | 20.29 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G384000.3 | EnsemblPlantsGene:TraesCS5D01G384000 | Gene3D:3.40.50.10470 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0044237 | InterPro:IF-2B-related | InterPro:NagB/RpiA_transferase-like | KEGG:00270+5.3.1.23 | ncoils:Coil | PANTHER:PTHR10233 |
| PANTHER:PTHR10233:SF29 | PFAM:PF01008 | SEG:seg | SUPFAM:SSF100950 | MapMan:17.4.1.2.3.4 | : |
Description
No Description!
Coordinates
chr5D:+:453804048..453811386
Molecular Weight (calculated)
66459.4 Da
IEP (calculated)
9.023
GRAVY (calculated)
-0.294
Length
613 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLRRPPRST SGGVEPKIRQ VGFVTPGVSA PSEPPAAAAA AVSLPGAAAG SPPASDLSPG SLSPVMIPPP RHVDHLSPDS PSPPASDVLL LASSAPQPSS
101: MRFAAASEFG EEDSRSLAPS AGELETNKGD LAEIRNEDAP ASIPQKQKPS KAERRAIQEA QRAAKAAAKE AGLSGKSTGA ASGANPATSK QAKPAKISQK
201: KDVPHAPSTV ASEKKVTERQ PERDRKKDVP HPRMQFDDVH RVEKAKKRAI VNQSEARNRV ELFRHLPQYV HGTQLPDLES KFFQLEPIHP SVYKVGLQYL
301: SGEVSGGNGR CIAMLLAFRE AIKDYSTPPN KTLSRDLTAK VSSYVSFFIE CRPLSISMGN AIRFLKNRIA KLPITLSESE AKASLQSDID RFINEKIVVA
401: DQVIVSHAIT KVRDDDVLLT YGSSSVVEMI LEHAHELGRK FRVIVVDSRP KLEGQGLLRR LVAKGINCTY THINAVSYIM HEVTRVFLGA SSILSNGTVY
501: SRVGTASVAM VAHAFGIPVL VCCEAYKFHE RVQLDSICAN ELGDPDVISK IPGRADLGDL KNWADNENLQ LLNLTYDATP SDYVSMIITD YGMLPPTSVP
601: VIVREYRKEQ LWV
101: MRFAAASEFG EEDSRSLAPS AGELETNKGD LAEIRNEDAP ASIPQKQKPS KAERRAIQEA QRAAKAAAKE AGLSGKSTGA ASGANPATSK QAKPAKISQK
201: KDVPHAPSTV ASEKKVTERQ PERDRKKDVP HPRMQFDDVH RVEKAKKRAI VNQSEARNRV ELFRHLPQYV HGTQLPDLES KFFQLEPIHP SVYKVGLQYL
301: SGEVSGGNGR CIAMLLAFRE AIKDYSTPPN KTLSRDLTAK VSSYVSFFIE CRPLSISMGN AIRFLKNRIA KLPITLSESE AKASLQSDID RFINEKIVVA
401: DQVIVSHAIT KVRDDDVLLT YGSSSVVEMI LEHAHELGRK FRVIVVDSRP KLEGQGLLRR LVAKGINCTY THINAVSYIM HEVTRVFLGA SSILSNGTVY
501: SRVGTASVAM VAHAFGIPVL VCCEAYKFHE RVQLDSICAN ELGDPDVISK IPGRADLGDL KNWADNENLQ LLNLTYDATP SDYVSMIITD YGMLPPTSVP
601: VIVREYRKEQ LWV
001: MDTRRGALAV PKVRRVGFFT SIEPPPESSL QRPNRSQSGP VDATTSSSPL SDSPSGNLIS PVLIPPSRHH SDNLTSRVAA AAAAPVPVPG PAAFRRYLTP
101: ERTLLHVGSY NPPDSLLGTS SPSSNGGLSE DSASLFGFQR SDSTKLSASL PNGGFDLTLA VRAPQESETK IATTSASQGK KKIAEVSGKS ESATTKPQKE
201: KEPKALKDKT TKAERRAIQE AQRAAKAAAK GEGSRRADES GRANPGKAAI KPQPKKERLP VTSSVSEKTA VAVEKEKRMD VPQTQMQYDD KSRVDKAKRR
301: AVVEQTESKN KVELFLHLPQ YERSNQLPNL SSNFFTLDSI HHAVYKVGLQ HLAGDISGDN ARCIAMLQAF QEAIEDYSTP PMKDLTMDLT AKINGYVSFL
401: IECRPLSMSM GNAIRFLKNQ IRKLPVNLSE SEAKSSLCSD IGRFIDEKTI IADKAIVQHA VTKIRDGEVL LTYGFSCVVE MILLYAHEIG KKFRVVIVDS
501: RPNLEGQKLL RRLVTRGLDC TYTHINAISY IMREATRVFL GASSIYSNGT LYARVGTSCI AMVANAFSVP VIVCCEAYKF HERVLLDSIC SNELGDPDAV
601: ANIPSFRTNA KHSKTMDNNK NLQFLNLMYD STPSEYISMI VSDYGMIPPT SIPVIVREYR RENLLL
101: ERTLLHVGSY NPPDSLLGTS SPSSNGGLSE DSASLFGFQR SDSTKLSASL PNGGFDLTLA VRAPQESETK IATTSASQGK KKIAEVSGKS ESATTKPQKE
201: KEPKALKDKT TKAERRAIQE AQRAAKAAAK GEGSRRADES GRANPGKAAI KPQPKKERLP VTSSVSEKTA VAVEKEKRMD VPQTQMQYDD KSRVDKAKRR
301: AVVEQTESKN KVELFLHLPQ YERSNQLPNL SSNFFTLDSI HHAVYKVGLQ HLAGDISGDN ARCIAMLQAF QEAIEDYSTP PMKDLTMDLT AKINGYVSFL
401: IECRPLSMSM GNAIRFLKNQ IRKLPVNLSE SEAKSSLCSD IGRFIDEKTI IADKAIVQHA VTKIRDGEVL LTYGFSCVVE MILLYAHEIG KKFRVVIVDS
501: RPNLEGQKLL RRLVTRGLDC TYTHINAISY IMREATRVFL GASSIYSNGT LYARVGTSCI AMVANAFSVP VIVCCEAYKF HERVLLDSIC SNELGDPDAV
601: ANIPSFRTNA KHSKTMDNNK NLQFLNLMYD STPSEYISMI VSDYGMIPPT SIPVIVREYR RENLLL
Arabidopsis Description
NagB/RpiA/CoA transferase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I048]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.