Factsheet for VIT_14s0083g00170.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0031g02330.t01
VIT_07s0130g00490.t01
VIT_08s0007g08550.t01
VIT_15s0048g00270.t01
VIT_17s0000g06020.t01
VIT_18s0001g03910.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38640.1	VIT_18s0001g03910.t01	AT1G37130.1	21798944
AT5G38640.1	VIT_08s0007g08550.t01	AT1G60080.1	21798944
AT5G38640.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944
AT5G38640.1	VIT_07s0031g02330.t01	AT3G48150.1	21798944
AT5G38640.1	VIT_07s0130g00490.t01	AT3G48150.1	21798944
AT5G38640.1	VIT_15s0048g00270.t01	AT4G00150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0645200-01	Rice	cytosol, plastid	25.0	82.0
Zm00001d033223_P003	Maize	cytosol	38.82	81.97
AT2G44070.1	Thale cress	cytosol	53.05	78.38
CDY27424	Canola	cytosol	15.85	63.93
CDY49077	Canola	cytosol, plastid	66.26	63.55
KRH01494	Soybean	nucleus	80.89	62.58
Zm00001d031081_P001	Maize	endoplasmic reticulum, vacuole	67.89	61.17
PGSC0003DMT400026040	Potato	cytosol	78.46	60.6
Bra028196.1-P	Field mustard	nucleus	77.44	60.48
KXG24018	Sorghum	mitochondrion, plastid	73.37	60.47
KRG93828	Soybean	endoplasmic reticulum, nucleus	81.1	60.45
CDY01647	Canola	cytosol	77.24	60.41
CDX74513	Canola	nucleus	77.24	60.32
TraesCS5D01G384000.3	Wheat	mitochondrion	75.0	60.2
Solyc02g089810.2.1	Tomato	nucleus	77.85	60.13
VIT_17s0000g04230.t01	Wine grape	plastid	79.27	60.09
KRH18264	Soybean	cytosol	80.49	60.09
TraesCS5B01G376300.1	Wheat	mitochondrion	74.8	60.03
TraesCS5A01G374400.3	Wheat	mitochondrion	74.39	59.71
Zm00001d013692_P001	Maize	cytosol	73.78	59.61
GSMUA_Achr4P22890_001	Banana	cytosol	78.66	58.9
GSMUA_Achr7P01240_001	Banana	cytosol	77.24	58.82
AT5G38640.1	Thale cress	cytosol	76.22	58.41
Os12t0617100-01	Rice	mitochondrion	70.53	57.17
HORVU5Hr1G092900.2	Barley	mitochondrion	73.78	56.99
CDX77270	Canola	mitochondrion	67.68	50.68
Bra014165.1-P	Field mustard	mitochondrion	67.48	50.53
CDY16477	Canola	mitochondrion	67.48	50.53
EER91168	Sorghum	plastid	73.98	50.42
AT1G48970.1	Thale cress	mitochondrion	65.65	48.5
VIT_13s0139g00250.t01	Wine grape	cytosol	15.65	18.47
VIT_09s0002g00390.t01	Wine grape	mitochondrion, plastid	17.28	14.68
VIT_06s0009g01100.t01	Wine grape	plastid	5.08	12.95

Protein Annotations

KEGG:00270+5.3.1.23	EntrezGene:100246278	wikigene:100246278	MapMan:17.4.1.2.3.4	Gene3D:3.40.50.10470	EMBL:AM447916
ProteinID:CAN69725	ProteinID:CAN69725.1	ProteinID:CBI16861	ProteinID:CBI16861.3	UniProt:D7SMR4	EMBL:FN594955
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0044237	InterPro:IF-2B-related	EntrezGene:LOC100246278	wikigene:LOC100246278	InterPro:NagB/RpiA_transferase-like
PFAM:PF01008	PANTHER:PTHR10233	PANTHER:PTHR10233:SF27	SUPFAM:SSF100950	UniParc:UPI0001BE115A	ArrayExpress:VIT_14s0083g00170
EnsemblPlantsGene:VIT_14s0083g00170	EnsemblPlants:VIT_14s0083g00170.t01	unigene:Vvi.17095	RefSeq:XP_002283177	RefSeq:XP_002283177.1	SEG:seg

Description

No Description!

Coordinates

chr14:+:22173834..22185128

Molecular Weight (calculated)

54536.0 Da

IEP (calculated)

9.822

GRAVY (calculated)

-0.209

Length

492 amino acids

Sequence
(BLAST)

001: MPPGISVKSG GASIEVQNEQ PASSRSLKEK TSKAERRALQ EAQRAAKAAA KAEVSKAPIA ASGVATSVNA KPAKVSKLSS QKKDSASVTA SEKKGVDRPP
101: EKDRKKDVPH PRMQFDDKSR VEKAKRRAVV RPIEVRNRVE LFRHLPQYER GTLLPDLESK FFLLDPMHPA VYKVGLQYLA GDVSGGNARC IAMLQAFQEA
201: IKDYSTPPEK TLVRDLTARL SSYVSFLIEC RPLSISMGNA IRFLKSRIAK LPLSLSESEA KASLQSDINR FINEKIVLAD KVIVRHAVTK IRDGDVLLTY
301: GSSSAVEMIL LYAHELGKQF RVVVVDSRPK LEGQLLLRRL VGKGLSCTYT HINAVSYIMH EVTRVFLGAS SVLSNGTVYS RVGTACVSMV AHAFRVPVLV
401: CCEAYKFYER VQLDSICSNE LGDPDAISKV PGREEINYLD DWAKSENLQL LNLIYDATPS DYVSMIITDY GMVPPTSVPV IVREYRREHL WI

Best Arabidopsis Sequence Match ( AT5G38640.1 )
(BLAST)

001: MESRRNPRAV VDPKVRQVGF FTSSQPDSST QQQQPDPIAA TSASSSSSTI SPSGNSLSPV MIPPPRLNSS DTFPLRVAVA GAAASAVSPS SFSYSSRRDF
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV

Arabidopsis Description

At5g38640 [Source:UniProtKB/TrEMBL;Acc:Q9FFV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.