Factsheet for VIT_13s0139g00250.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plasma membrane 1
cytosol 2
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	65.47	85.85
KRH39206	Soybean	cytosol	85.13	85.54
KRH48472	Soybean	endoplasmic reticulum	84.17	84.58
Solyc11g005600.1.1	Tomato	nucleus	82.01	83.01
AT3G07300.3	Thale cress	cytosol	81.06	82.64
Bra040371.1-P	Field mustard	cytosol	77.46	81.77
CDY28065	Canola	cytosol	79.86	81.22
KRH30036	Soybean	cytosol	80.1	80.48
KXG38620	Sorghum	cytosol	77.22	77.4
Zm00001d033046_P002	Maize	cytosol	75.78	75.96
TraesCS1B01G152300.1	Wheat	plastid	74.34	75.06
TraesCS1A01G138500.3	Wheat	plastid	74.34	74.88
TraesCS1D01G135300.2	Wheat	plastid	74.34	74.88
HORVU1Hr1G035490.4	Barley	plastid	74.34	74.52
CDY08006	Canola	extracellular	14.87	72.94
PGSC0003DMT400044316	Potato	cytosol	72.18	72.53
Zm00001d014246_P004	Maize	cytosol	76.5	71.52
CDY34906	Canola	mitochondrion	72.18	65.15
Os10t0392700-02	Rice	cytosol, mitochondrion, plastid	52.04	64.58
GSMUA_Achr11P...	Banana	cytosol	14.87	59.62
Bra029637.1-P	Field mustard	cytosol	80.58	44.21
CDY24631	Canola	cytosol	78.66	43.62
VIT_14s0083g00170.t01	Wine grape	cytosol	18.47	15.65
VIT_09s0002g00390.t01	Wine grape	mitochondrion, plastid	18.94	13.64
VIT_17s0000g04230.t01	Wine grape	plastid	18.23	11.71
VIT_06s0009g01100.t01	Wine grape	plastid	2.88	6.22

Protein Annotations

KEGG:00270+5.3.1.23	EntrezGene:100256712	wikigene:100256712	MapMan:17.4.1.2.3.2	Gene3D:3.40.50.10470	ProteinID:CBI35142
ProteinID:CBI35142.3	UniProt:D7TXB7	EMBL:FN596255	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0044237	InterPro:IF-2B-related
EntrezGene:LOC100256712	wikigene:LOC100256712	InterPro:NagB/RpiA_transferase-like	PFAM:PF01008	PANTHER:PTHR10233	PANTHER:PTHR10233:SF9
SUPFAM:SSF100950	TIGR:TC70993	UniParc:UPI00015CC3C8	ArrayExpress:VIT_13s0139g00250	EnsemblPlantsGene:VIT_13s0139g00250	EnsemblPlants:VIT_13s0139g00250.t01
unigene:Vvi.3382	RefSeq:XP_002272876	RefSeq:XP_002272876.2	RefSeq:XP_003633538	RefSeq:XP_003633538.1	RefSeq:XP_010659167.1
RefSeq:XP_010659169.1	RefSeq:XP_019080107.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr13:+:20496637..20507114

Molecular Weight (calculated)

44948.0 Da

IEP (calculated)

6.194

GRAVY (calculated)

-0.015

Length

417 amino acids

Sequence
(BLAST)

001: MPDVQVLVNE FIIKLKKRKV EGSQATARMT AELLRSVISQ QRVPYNNQAG ALIDAIKAVG EQLIAANPVE LAVGNIVRRV LHIIREEDLS LATAAVAGLN
101: LSAVSDDEDD GEREDHPVLS AAAVAAAARS TLRPPSLQTL LEDMPDSAAV PQSSSSGGDS EGKSKSADKS SRSRKLKHDI IEAVNELIQD IATCHEQISE
201: QAVEHIHQNE VILTLGRSRT VMEFLCAAKE KKRSFRVFVA EGAPRYQGHV LAKELVARGL QTTLITDSAV FAMISRVNMV IVGAHAVMAN GGVIAPVGLN
301: MVALAAQRHA VPFVVLAGTH KLCPLYPHNP EVLLNELKSP SELLDFGEFS DCMDFGSGNG SPLLHVVNPA FDYVPPKLVS LFITDTGGHN PSYMYRLIAD
401: YYSADDLVVQ RRPASGN

Best Arabidopsis Sequence Match ( AT3G07300.1 )
(BLAST)

001: MPDVQSTVVE FVNKLRKRKI EGSQATAKYT VELLRSVISH QRVPHANQAA ALIDAVKAVG EQLIAANPVE LAVGNVVRRV LHIIREEDLS LTTAAMGGLD
101: LLDASDDDDV DNCKGIGFPA MSAAVVAAAA RSTLRPPSLQ TLLEGTPESA TVPYTSSSGA DSESKTADKS SLTRKLKHDV IEGVNQLIQE IAGCHEQIAE
201: QAIEHIHQNE VILTLGSSRT VLEFLCAAKE KKRSFRVFVA EGAPRYQGHL LAKELVARGL QTTVITDSAV FAMISRVNMV IIGAHAVMAN GGVIGPVGVN
301: MAALAAQKHA VPFVVLAGSH KLCPLYPHNP EVLLNELRSP SELLDFGEFS DCLDFGAGSG SLQVVNPTFD YVPPNLVSLF ITDTGGHNPS YMYRLIADYY
401: SADDLVM

Arabidopsis Description

AT3G07300 protein [Source:UniProtKB/TrEMBL;Acc:B3H7H1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.