Factsheet for Bra014165.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 2
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16477	Canola	mitochondrion	99.39	99.39
CDX77270	Canola	mitochondrion	98.33	98.33
CDY27424	Canola	cytosol	17.05	91.8
AT1G48970.1	Thale cress	mitochondrion	84.93	83.78
Os03t0645200-01	Rice	cytosol, plastid	16.29	71.33
Zm00001d033223_P003	Maize	cytosol	24.51	69.1
VIT_14s0083g00170.t01	Wine grape	cytosol	50.53	67.48
PGSC0003DMT400026040	Potato	cytosol	56.77	58.56
KRH01494	Soybean	nucleus	56.32	58.18
Solyc02g089810.2.1	Tomato	nucleus	56.32	58.08
KRH18264	Soybean	cytosol	58.14	57.97
KRG93828	Soybean	endoplasmic reticulum, nucleus	57.99	57.73
Bra028196.1-P	Field mustard	nucleus	54.64	56.98
KXG24018	Sorghum	mitochondrion, plastid	51.6	56.78
GSMUA_Achr7P01240_001	Banana	cytosol	55.4	56.35
Zm00001d013692_P001	Maize	cytosol	51.9	55.99
GSMUA_Achr4P22890_001	Banana	cytosol	55.86	55.86
TraesCS5B01G376300.1	Wheat	mitochondrion	51.75	55.46
TraesCS5D01G384000.3	Wheat	mitochondrion	51.6	55.3
Zm00001d031081_P001	Maize	endoplasmic reticulum, vacuole	45.66	54.95
TraesCS5A01G374400.3	Wheat	mitochondrion	51.14	54.81
Os12t0617100-01	Rice	mitochondrion	50.23	54.37
HORVU5Hr1G092900.2	Barley	mitochondrion	51.45	53.06
EER91168	Sorghum	plastid	52.36	47.65
Bra008029.1-P	Field mustard	cytosol	12.94	24.15
Bra039699.1-P	Field mustard	cytosol	13.7	23.5
Bra040371.1-P	Field mustard	cytosol	12.02	20.0
Bra041170.1-P	Field mustard	cytosol, mitochondrion	1.98	17.81
Bra029637.1-P	Field mustard	cytosol	12.18	10.53

Protein Annotations

EnsemblPlants:Bra014165.1	EnsemblPlants:Bra014165.1-P	EnsemblPlantsGene:Bra014165	Gene3D:3.40.50.10470	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0044237	InterPro:IF-2B-related	InterPro:NagB/RpiA_transferase-like	KEGG:00270+5.3.1.23	PANTHER:PTHR10233
PANTHER:PTHR10233:SF28	PFAM:PF01008	SEG:seg	SUPFAM:SSF100950	UniParc:UPI0002546548	UniProt:M4DCF1
MapMan:17.4.1.2.3.4	:	:	:	:	:

Description

AT1G48970 (E=1e-282) | GTP binding / translation initiation factor

Coordinates

chrA08:+:2878336..2881065

Molecular Weight (calculated)

72291.6 Da

IEP (calculated)

9.601

GRAVY (calculated)

-0.400

Length

657 amino acids

Sequence
(BLAST)

001: MDPRRGPLAV PKVRRVGFFT SIEPSPETPR PNRSLSGPAE AITSSSPLSD SPSGQFISPV QIPPSRHHSD NLASRAAPVP VPGPSAFRRQ LANDRALHVG
101: SYNPVDSLLG TSPPSSNGEV SEDSGSLFGF QRSDSAKLSA SFPNGGFDMT LRVRAPQESE AKVAIASTSD GRKKNVEASG EGESLAAKPR KEKETKSLKE
201: KTSKAERRAI QEAQRAAKAA AKGEGSKRAG ESSRPKPSKP AKQPQPKKEA PQVTSSVSEK RAVSVEKERR MDVPQTQMQY DDKSRVDKAK RRSVVEQTES
301: KNKVELFLHL PQYERGNQLP NLSSNIFSLD TIHHAVYKVG LQHLAGDIAG DNARCIAMLH AFQEAINDYT TPPMKDLTMD LTAKINGYVS FLIECRPLSM
401: SMGNAIRFLK NQIRKLPVDL SEPEAKASLC SEIGRFIDEK ILLADKVIVQ YAVTKIRDGE VLLTYGFSCV VEMILLYAHE IGRKFRVVIV DSRPNLEGQK
501: LLRRLVTRGL DCTYTHINAV SYIMGEVTRV FLGASSIFSN GTLYSKVGTA CVAMVANAFS VPVIVCCEAY KFHERVLLDS ICSNELGDPD AIANVPLRNN
601: KKHSKTMDNN KNLQFLNLMY DSTPAEYISM IVTDYGMIPP TSIPVIVREY RREDLLL

Best Arabidopsis Sequence Match ( AT1G48970.1 )
(BLAST)

001: MDTRRGALAV PKVRRVGFFT SIEPPPESSL QRPNRSQSGP VDATTSSSPL SDSPSGNLIS PVLIPPSRHH SDNLTSRVAA AAAAPVPVPG PAAFRRYLTP
101: ERTLLHVGSY NPPDSLLGTS SPSSNGGLSE DSASLFGFQR SDSTKLSASL PNGGFDLTLA VRAPQESETK IATTSASQGK KKIAEVSGKS ESATTKPQKE
201: KEPKALKDKT TKAERRAIQE AQRAAKAAAK GEGSRRADES GRANPGKAAI KPQPKKERLP VTSSVSEKTA VAVEKEKRMD VPQTQMQYDD KSRVDKAKRR
301: AVVEQTESKN KVELFLHLPQ YERSNQLPNL SSNFFTLDSI HHAVYKVGLQ HLAGDISGDN ARCIAMLQAF QEAIEDYSTP PMKDLTMDLT AKINGYVSFL
401: IECRPLSMSM GNAIRFLKNQ IRKLPVNLSE SEAKSSLCSD IGRFIDEKTI IADKAIVQHA VTKIRDGEVL LTYGFSCVVE MILLYAHEIG KKFRVVIVDS
501: RPNLEGQKLL RRLVTRGLDC TYTHINAISY IMREATRVFL GASSIYSNGT LYARVGTSCI AMVANAFSVP VIVCCEAYKF HERVLLDSIC SNELGDPDAV
601: ANIPSFRTNA KHSKTMDNNK NLQFLNLMYD STPSEYISMI VSDYGMIPPT SIPVIVREYR RENLLL

Arabidopsis Description

NagB/RpiA/CoA transferase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I048]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.