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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • nucleus 1
  • mitochondrion 4
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
MultiLoc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plasma membrane
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY27424 Canola cytosol 15.92 86.89
CDX77270 Canola mitochondrion 84.38 85.54
Bra014165.1-P Field mustard mitochondrion 83.78 84.93
CDY16477 Canola mitochondrion 83.78 84.93
AT2G44070.1 Thale cress cytosol 34.68 69.37
Zm00001d033223_P003 Maize cytosol 24.02 68.67
Os03t0645200-01 Rice cytosol, plastid 15.47 68.67
VIT_14s0083g00170.t01 Wine grape cytosol 48.5 65.65
PGSC0003DMT400026040 Potato cytosol 56.91 59.5
Solyc02g089810.2.1 Tomato nucleus 56.46 59.03
KRG93828 Soybean endoplasmic reticulum, nucleus 56.46 56.97
KRH18264 Soybean cytosol 56.31 56.9
KRH01494 Soybean nucleus 54.2 56.76
AT5G38640.1 Thale cress cytosol 54.05 56.07
KXG24018 Sorghum mitochondrion, plastid 49.7 55.44
GSMUA_Achr7P01240_001 Banana cytosol 53.45 55.11
GSMUA_Achr4P22890_001 Banana cytosol 54.05 54.79
Zm00001d013692_P001 Maize cytosol 50.0 54.68
TraesCS5B01G376300.1 Wheat mitochondrion 50.3 54.65
TraesCS5D01G384000.3 Wheat mitochondrion 49.85 54.16
TraesCS5A01G374400.3 Wheat mitochondrion 49.4 53.67
Zm00001d031081_P001 Maize endoplasmic reticulum, vacuole 43.84 53.48
Os12t0617100-01 Rice mitochondrion 48.5 53.21
HORVU5Hr1G092900.2 Barley mitochondrion 49.25 51.49
EER91168 Sorghum plastid 50.45 46.54
AT1G53880.1 Thale cress cytosol 13.06 22.6
AT1G72340.2 Thale cress cytosol, plastid 13.21 21.52
AT3G07300.3 Thale cress cytosol 11.41 18.58
AT1G53900.2 Thale cress mitochondrion 13.06 14.4
Protein Annotations
KEGG:00270+5.3.1.23MapMan:17.4.1.2.3.4Gene3D:3.40.50.10470EntrezGene:841319UniProt:A0A178W9M9ProteinID:AEE32373.1
ArrayExpress:AT1G48970EnsemblPlantsGene:AT1G48970RefSeq:AT1G48970TAIR:AT1G48970RefSeq:AT1G48970-TAIR-GEnsemblPlants:AT1G48970.1
TAIR:AT1G48970.1Unigene:At.49959UniProt:F4I048GO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0016740GO:GO:0044237InterPro:IF-2B-relatedRefSeq:NP_175327.3InterPro:NagB/RpiA_transferase-likeProteinID:OAP14235.1
PFAM:PF01008PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293
PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064
PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611
PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010
PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046
PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137
PO:PO:0025022PO:PO:0025281PANTHER:PTHR10233PANTHER:PTHR10233:SF28SUPFAM:SSF100950UniParc:UPI000150579B
SEG:seg:::::
Description
NagB/RpiA/CoA transferase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I048]
Coordinates
chr1:-:18113714..18117833
Molecular Weight (calculated)
72969.3 Da
IEP (calculated)
9.650
GRAVY (calculated)
-0.362
Length
666 amino acids
Sequence
(BLAST)
001: MDTRRGALAV PKVRRVGFFT SIEPPPESSL QRPNRSQSGP VDATTSSSPL SDSPSGNLIS PVLIPPSRHH SDNLTSRVAA AAAAPVPVPG PAAFRRYLTP
101: ERTLLHVGSY NPPDSLLGTS SPSSNGGLSE DSASLFGFQR SDSTKLSASL PNGGFDLTLA VRAPQESETK IATTSASQGK KKIAEVSGKS ESATTKPQKE
201: KEPKALKDKT TKAERRAIQE AQRAAKAAAK GEGSRRADES GRANPGKAAI KPQPKKERLP VTSSVSEKTA VAVEKEKRMD VPQTQMQYDD KSRVDKAKRR
301: AVVEQTESKN KVELFLHLPQ YERSNQLPNL SSNFFTLDSI HHAVYKVGLQ HLAGDISGDN ARCIAMLQAF QEAIEDYSTP PMKDLTMDLT AKINGYVSFL
401: IECRPLSMSM GNAIRFLKNQ IRKLPVNLSE SEAKSSLCSD IGRFIDEKTI IADKAIVQHA VTKIRDGEVL LTYGFSCVVE MILLYAHEIG KKFRVVIVDS
501: RPNLEGQKLL RRLVTRGLDC TYTHINAISY IMREATRVFL GASSIYSNGT LYARVGTSCI AMVANAFSVP VIVCCEAYKF HERVLLDSIC SNELGDPDAV
601: ANIPSFRTNA KHSKTMDNNK NLQFLNLMYD STPSEYISMI VSDYGMIPPT SIPVIVREYR RENLLL
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.